Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | NCWDCPFKFKCPNRQGLAALTSIHSNRREDRRWNFACASAGVGTTGQTSRSGGLDFNQFDRPLSFTCPEDYYLTTLESAHSNNKEDRVWRFECRKIANAYLRGCSTTGYLNGFDQPLNYIASNDRIITGLHSYHNNRKEDRRWKVSTCKVEC |
1 | 6vlsA5 | 0.07 | 0.07 | 0.94 | 0.72 | DisCoVER | | SDEDAKMIVEAKPGHALIGFEISND---SITVLKVYEAKLKQNYQVDKDYGDMDKLLQIYYTNNIVFPNEYVITKIDFTKKM--KTLRYEVTANYDSTGEIDLESSDDGVYMPLGVISETF--LTPINGFGLQADENSRLITLTCKSYLL-- |
2 | 6vlsA | 0.09 | 0.07 | 0.77 | 1.00 | DEthreader | | -GSDAKMIVEAKPGHALGFEISN-S-----ITVLKVYEAKLKQ--------------QIYYTNNIVFPNEYVITKIDFTKK-M-KTLRYEVTANFYDSST-----------YMPLGVISETFL-TPINGFGLQADENSRLITLTCKSYLLAT |
3 | 6vlsA5 | 0.07 | 0.07 | 0.99 | 0.84 | CEthreader | | SDEDAKMIVEAKPGHALIGFEISNDSITVLKVYEAKLKQNYQVDKDSLSEVIYGDMDKLLCPDQIVFPNEYVITKIDFTKKM--KTLRYEVTANFYDSGEIDLNKKKNDDGVYMPLGVISETFLTPINGFGLQADENSRLITLTCKSYLREL |
4 | 2nziA | 0.07 | 0.07 | 0.97 | 0.77 | EigenThreader | | YQSNATLVCKVHPKPIVKWYRQIIASVTDDDAYQVRATNQGMGAGEVVSIKIPFSGKPDPRSFTSLVNGVERFYVVCAKNR----FGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTASDGYIVEKCATLFGKTSYQFRVIAENKFG |
5 | 3erbA | 0.15 | 0.14 | 0.94 | 1.37 | HHpred | | WAPGSLLTYSCPQGLYPSPA-SRL--CKSSGQWQTPCKPPVSFENGIYTPRL--GSYPVGGNVSFECEDGFILRGSPVRQC--RPNGMWDGVCDNGHCPNSLGAVRTGFRFGHGDKVRYRCSSNLVLTGSSERE--CQGNGVWSGPICRQPY |
6 | 1c1zA | 0.14 | 0.13 | 0.93 | 0.43 | MRFsearch | | ----NTISFSCNTGFYLNGADSAK--CTEEGKWSPVCAPIICPTFATLRVYKPGNNSLYRDTAVFECLPQHAMFGNDTITCTT--HGNWTKECREVKCPRPDNGFVNYPTLYYKDKATFGCHDGYSLDGPEEIE--CTKLGNWSAMSCKASC |
7 | 6f5gA | 0.08 | 0.08 | 0.96 | 0.75 | FFAS-3D | | PTRMATAVARCAPDEELLSCSSFSRSGKRRGERMARCCLLPQ---ANCSVHTAPPAEASMGTRVHCHQQGHVLTGCSSHWEVEDREASIHASCCHAPGLECKVKEHG--IPAPQEQVTVACEEGWTLTGCSALPGTSHVLGAYVAICCRSR- |
8 | 3erbA | 0.16 | 0.15 | 0.94 | 1.37 | SPARKS-K | | WAPGSLLTYSCPQGLYPSPASRLCKS---SGQWQTVCKPPVSFENGIYTPRLG--SYPVGGNVSFECEDGFILRGSPVRQCR--PNGMWDAVCDNGAGHISLGAVRTGFRFGHGDKVRYRCSSNLVLTGSSE--RECQGNGVWSEPICRQPY |
9 | 1c1zA | 0.13 | 0.12 | 0.95 | 1.26 | CNFpred | | FEYPNTISFSCNTGFYLNGADSAK--CTEEGKWLPVCAPIICPTFATLRVYK-GNNSLYRDTAVFECLPQHAMFGNDTITCTTHGNWTKLPECREVKCP-PDNGFVNY-TLYYKDKATFGCHDGYSLDGP--EEIECTKLGNWSAPSCKASC |
10 | 6vlsA5 | 0.07 | 0.06 | 0.79 | 1.00 | DEthreader | | GSEDAKMIVEAKPGHALIGFEISND-S--ITVLKVYEAKLKQ---------------QIYYTNNIVFPNEYVITKIDFTKK-M-KTLRYEVTANFYDSST-----------VYMPLGVISEFL-TPINGFGLQADENSRLITLTCKSYLELA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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