Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | MGDQGPQDRPRSPGMDSKPWYCDKQPSKCFAKRKHRRLRFPPMDPRNRVFVTQGMDDFRYGCPSPEDTLVCRCDEFLLLKISLRGPQADPKSRKKKLRKKAALFSKLSRAKPARKTFVEGVEAQLTAKPPLAMNYNLGEDMPPDLLLQVLKPLDPERKLEDACACEGQGTTTDEPMEPGKYPCREFSPRPPETRVSCLHPEPPKSPVSSLCPEPPETGVSHLRPEPPETQVSSLHLEPPKTGVSSLLPEPPETQV |
1 | 2pl5A | 0.05 | 0.04 | 0.89 | 0.74 | DisCoVER | | YAEFLSPVVI----AYETYGTLS-SSKNNAI--------LICHALSGDAHAAYIGFDTNQYFIICSNVIGGCKGSSGPLYGSFVSIQAGGSMGGMQALEWSISNCIVMASTAEHMQIA-FNEVGRQ--AILWNGLYDENSPRKGL-ALA--RMVGHITYLSDPRGNILSTFAVGIYQVDRFDA-NSYIYVTKALDHYSLGKGKELTLSRFLVVSY-SSDWLYPPQSIVLEDKRVFYVEL---Q--SGEGHDSFL- |
2 | 5mssA | 0.06 | 0.04 | 0.74 | 0.67 | DEthreader | | ESGYALVLRSAISELAVKEFIAT-IGFTSDYTSLDIAVLLLSVPLTLAPAVFRRLLVFDYDTL----ATDAGDD--SLSL----------------------LIY----TSGSTG------------RNVQFWGGIWHNAFDD--NFMPLSHVGRLMGTTTYFIAKLSFDYLARPTKTAHVDRLVPPQTILPGYYRPTTEVLGDRLKLGSYLLQAREEGL--QSYEVP---GGDSLASVSA-------------- |
3 | 1xfdA | 0.07 | 0.07 | 1.00 | 0.52 | CEthreader | | EVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYD |
4 | 6bk8T | 0.07 | 0.07 | 0.98 | 0.53 | EigenThreader | | YLKRNRLDMGQWIRYAQFEIEQHDMRRARSIFERALLVDSSFSDMEVAKLVNSFAHWEAAQSSALYQIAIEKWPSNQLLKAGLLDFEKQF------NSIEETISYKRKMEYETILSNWLYLDLISEFPKQIMQTFEKAIVDSKYLWMRYICYVELESLLEEELFQRLIDDIFSKIWLMYAKFLIRDVPKARKILGKAIGTFKGYIELEVKLEFDRVRKIYEKFIEFQDLQIWSQYGELEENWDRVRGIYTIALDE |
5 | 6btmE | 0.14 | 0.05 | 0.36 | 0.27 | HHpred | | -------------------------------NSAPNYQYFPNMYESVAYEPYTEAKIFKGGKLPVEGTINRGFEPYEYENSTAGYEL-----AKANL-KSPL---TEEEKGKGKELFE---IYCIS-CHGAAGNG------------------------------------------------------------------------------------------------------------------------ |
6 | 2pffB | 0.12 | 0.02 | 0.20 | 0.35 | MRFsearch | | -------------------------------------------------------PDDDYGFKQ--------------------------------GSQEQGMGMDLYKTSKAAQDVWNRADNHF----------------KDTYGFSILDIV------------------------------------------------------------------------------------------------------ |
7 | 2xd8A | 0.11 | 0.11 | 0.98 | 0.58 | FFAS-3D | | LGRSNLSTGTGYGGADKYALYLKLFSGEMFKGFQHETIARDLVTKRT---LKNGSSFHTPGTPILGNADKAPPVAEKTIVMDDLLISSAF---VYDLDETLAHYELRGESKKIGYALAEKYDRLIRVGSGTNESDAFTASALVNAFYDAAAVLNPRQYIQDIGSNGLVNRDVQGSALQSGNGVIEISMNIPFLGKYGVKYGGTTGETSPIGPTPENANATGGVNNDLGAKSCGLIFQKEAAGVVEPQVQNPAAAV |
8 | 5jcss | 0.06 | 0.05 | 0.92 | 1.15 | SPARKS-K | | LISTVRINEDHQKDSSNKIYNLNMIGMRIWNVEEPSEEDLTHILAQKFPILTNLIPKL------IDSYKNYMNTKFISLNKGAHTRVVSVCERLDILFKNNINKPDQLIQSSVYDSIFSEAADCFA-----GAIGEFKAL------EPIIQAIGESLDIAS----SRISLFLTQHVPTLENLDDSIKIGRAVLLKEKLNIQKKSMNSTLFAFTNHSLRLMEQISVCIQMTEPVLLVGETKTTVVQQLAKMLAKKL |
9 | 2vwkA | 0.08 | 0.03 | 0.34 | 0.42 | CNFpred | | --------------------------------------------------------------------KFCKDFPGFIPSLLGDLEERQKVKKKMKATIDPIEKKLLDYRQRAIKILANSFYGYYGYAKARWYCKECAESVGRQYIETTIREIE----------------------------------------------------------------------------------------------------- |
10 | 6rlbA | 0.03 | 0.02 | 0.70 | 0.83 | DEthreader | | ----------YYLVKLKIGKRLE-EVLAIRTI-----HEKF--------KILTRVFEPTGLNAVQYKIIAEKRPTISKLMLEETARVFHSAKDLLDQLKLYEQEQFDDWSRDIQSGLSDSRSGLC----------------------L--E---LFVIPAKIQQ--N--------WDNPKELEGQKLNAARLANRRKWHTFCKVVLMNIDLLR-------------WNHQKAEHQQMEALNENLMRFIGIP-Q-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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