Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | PAKLVISLFMNDQSIVQRVLALLEEKFGSIDMISPWFDFDYTNYYHREMGSPLFRRVVVFKALVAQDSLAEIKISTNNIEAMWKENGKRAVNIDPGYLVKSRFILATGKDFAHRVYIGQGIYADLTLMYQKGRFIDLDWTYPDYRGNAIKSFLEIVRAKY |
1 | 5z79A1 | 0.18 | 0.14 | 0.82 | 1.00 | DEthreader | | RNIAVLNFGTDCVTILETALYLTEKYLGKIINSSYIYETVPEYI-MN-TSY-FFNLTVVVRTFVED--PLAMLVILKYIEQIMK---NRMIDIDILFFNNYT-I--------FEKSISLGIFLCIPH---------VYTKYRYSILLCLNDIIPEYK--- |
2 | 5z79A | 0.16 | 0.12 | 0.79 | 1.00 | DEthreader | | RNIAVLNFGTDCVTILETALYLTEKYLGKIINSSYIYETVPEYI-----TSYFFNLTVVVRTFVE--DPLAMLVILKYIEQIMK---NRMIDIDILFFN--NYT---------IFEKILEFLCIPHV--------TKY--RYSI-LLCLNDIIPEYKAL- |
3 | 5z79A | 0.19 | 0.16 | 0.82 | 1.00 | DEthreader | | RNIAVLNFGTDCVTILETALYLTEKYLGKIINSSYIYETVPEYI--M--TSYFFNLTVVVRTFVED--PLAMLVILKYIEQIMK---NRMIDIDILFFNNYT-I--------FEKSISLGIFLCIPH---------VYTKYRYSILLCLNDIIPEYKA-- |
4 | 2bmbA | 0.13 | 0.11 | 0.79 | 1.00 | DEthreader | | SKRAFLAFGSNRFKHIQMALQLLSRETVKLRNISSIFESEPMYF-KD--QTPFMNGCVEV-ETLL--TPSELLKLCKKIEYEELQR---TIDLDIMFLNGEDII---------VNE---PDLNIPH------------PRMERTVLEPLCELISPVHTQV |
5 | 2bmbA1 | 0.13 | 0.10 | 0.78 | 0.81 | DisCoVER | | WKRAFLAFGSNRFKHIQMALQLLSRETVKLRNISSIFES-EP-MYFKDQ-TPFMNGCVEVETLL---TPSELLKLCKKIEYEELQR--TIDLDIVMFLNSAGEDIIV---------NEPDLNIP----------HPRMLERTFVL--EP--LC-ELI--- |
6 | 3qbcA | 0.12 | 0.10 | 0.80 | 1.00 | DEthreader | | MIQAYLGLGSNRESQLNDAIKILNEYGISVSNISPIYETA-PVGYTE-QPN-FLNLCVEI-QTTL--TVLQLLECCLKTEECLHRIRPRTLDVDILLYGEEM-I---------DLP----KLSVPH----------PRMNERAFVLIPLNDIAANVVK-- |
7 | 2cg8C2 | 0.12 | 0.09 | 0.79 | 0.95 | CEthreader | | KQRAFIALGSNMQANLKQAIDKLRARGIHILKESSVLA-------------SFANQVVEVETWLP---AQDLLETLLAIESEL----GRLIDLDLLFVEDQILYTDDLILPHPYIAERLFVLESLQEIAPHFIHPILKQPIRNLYDA------------- |
8 | 1fnxH | 0.07 | 0.05 | 0.76 | 0.73 | EigenThreader | | DSKTNLIVNYLPQEFKSLFGSIG-----DIESCKLVRDKITGQ-------SLGYGFVNYSDP--------NDADKAINTLNGLKL-QTKTIKVSYARPSSASIYVSGLPKTMRILLDQVSRGVGFIRFDEPITVKFANNPSQ------------------ |
9 | 1im6A | 0.18 | 0.14 | 0.79 | 0.40 | HHpred | | -TVAYIAIGSNLLEQVNAALKALGDIPEHIFYRTPPLGPQQPDYL---------NAAVALETSLAPEELLN---HTQRIELQQGAWGPRTLDLDI--MLFGNEVINTERLVPHYDMK-------------NRGFMAPELVFPD-GE-MLRQILHTR---- |
10 | 3bzkA | 0.16 | 0.12 | 0.76 | 0.55 | MRFsearch | | --VLSASLKVGAPGTLHPCEVMIAERFGLSNQGR------------------AADKWLAEGELRDGAEDEAISVFARNLHDLLLAAPRATLGLDPGLRTGVKVAVVDA----------TGKLLDTATVYPH---------APKNQWDQTLAVLAALCAKH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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