>PF14307 (336 residues) VVAYYLPQFHPIAENDLAWGKGFTEWRNVTRAFPHFEGHYQPRVPGELGYYDLRVPAVME RQVELAKLHGVSAFCFHFYWFGGDRLLELPIDHFLNNKNLDIEFSLCWANENWTRKWDGG MNELIRAQAHSPEDDIEFIRYLGKYFADPRYMKVDGKPILTIYRPSIFPDIAATARRWRQ EIRKMGFPGIYLIAANSFGFTDYGKFGFDALSEFPPHNTKIAQSKTVQVTSKWKDGLLFS YPALVAYEEQKVLPKGVVHPGIIPGWDNSARRPHDGTIFYDASPTLFRKWLDVCFARANE NPAGEKFIFINAWNEWAEGAYLEPDNKYGYAYLAAI |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | VVAYYLPQFHPIAENDLAWGKGFTEWRNVTRAFPHFEGHYQPRVPGELGYYDLRVPAVMERQVELAKLHGVSAFCFHFYWFGGDRLLELPIDHFLNNKNLDIEFSLCWANENWTRKWDGGMNELIRAQAHSPEDDIEFIRYLGKYFADPRYMKVDGKPILTIYRPSIFPDIAATARRWRQEIRKMGFPGIYLIAANSFGFTDYGKFGFDALSEFPPHNTKIAQSKTVQVTSKWKDGLLFSYPALVAYEEQKVLPKGVVHPGIIPGWDNSARRPHDGTIFYDASPTLFRKWLDVCFARANENPAGEKFIFINAWNEWAEGAYLEPDNKYGYAYLAAI | |||||||||||||||||||
1 | 5ngwA | 0.16 | 0.13 | 0.83 | 1.17 | DEthreader | NVGAFYK-F---------------PNW--NLN--------YNEMP-VSGTYTAANTDQFPTHIRQANKAGINFFLFDLVSSQNAGGSSDIVARYNNELAFIVKYAFNYNYGPLG------------NPVPKEIVFQQDFLNIADLAENTNYYRLDGKPVVYILNAQNLAASPAVFNRMRQAVRDYNGMELYIIGMQPQPRYDRFVGAVDAVTHNTYMQLNENNSYE------------RI-LYFDKMVYGAYSLGLEYIPTISPSSNYKLQNPNNQNYIFEKNEKLFRSVCNAARGAV--G-E-SKMVLLESFNNWNIGTQIEESNAYGDQYLKIL | |||||||||||||
2 | 5ngwA | 0.16 | 0.13 | 0.83 | 1.17 | DEthreader | NVGAFYK-F---------------PNW--NLNY--------NEMP-VSGTYTAANTDQFPTHIRQANKAGINFFLFDLVSSQNAGGSFDIVARYNNELAFIVKYAFNYNYGPL---------------VPKEIVFQQDFLNIADLAENTNYYRLDGKPVVYILNAQNLAASPAVFNRMRQAVRAYNGMELYIIGMQPQPRYDRFVGAVDAVTHNTYM-QLNENNSYER---------ILYFDKMVYGAWSYSALGLEYIPTISPSSNYKLQNPNNQNYIFEKNEKLFRSVCNAARGAV--G-E-SKMVLLESFNNWNIGTQIEESNAYGDQYLKIL | |||||||||||||
3 | 5ngwA | 0.16 | 0.14 | 0.87 | 5.28 | HHpred | VGAFYKFP----------------NW-----------NLNYNEMP-VSGTYTAANTDQFPTHIRQANKAGINFFLFDLVSSQNAGGHSFDVARYAGFPDSIVKYAFNYGPLGINNPVDST-TDETTNTLDPEIVFQQDFLNIADLENNTNYYRLDGKPVVYILNAQNLNDSPAVFNRMRQAVRDNGM-ELYIIGMQPQWQPPRFVGAVDAVTHNTYMQLNENNSYER----------ILYFDKMVYGSQELSEFNLEYIPTISPSSNYKLQNPNNQNYIFEKNEKLFRSVCNAARGAV----GESKMVLLESFNNWNIGTQIEESNAYGDQYLKIL | |||||||||||||
4 | 5ngwA | 0.17 | 0.15 | 0.85 | 1.46 | DisCoVER | VGAFYKFP----------------NWNL---N--------YNEMPV-SGTYTAANTDQFPTHIRQANKAGINFFLFDLVSSQNAHSSFDIVARYNNELGSIVKYAFNYNYGVDSTTDETTNTLDKEIV-F----QQDFLNIAD-LAENTNYYRLDGKPVVYILNAQNLNDSPAVFNRMRQAVRAYNGMELYIIGMQPQWPLRFV-GAVDAVTHNTYMQL---------NENNSYERILYFDKMVYGAWSYSQLGNLEYIPTISPSSNYKLQNPNQNYIFE-KNEKLFRSVCNAARGAV--GE--SKMVLLESFNNWNIGTQIEESNVYGDQYLKI- | |||||||||||||
5 | 5ngwA | 0.16 | 0.14 | 0.89 | 0.93 | MRFsearch | VGAFYKFPN---------------------------WNLNYNEMP-VSGTYTAANTDQFPTHIRQANKAGINFFLFDLVSSQNADIVARYNNELAGFTPVKYAFNYNYGPLGINNNVDSTTDETTNTLDPKEIVFQQDFLNIADLANNTNYYRLDGKPVVYILNAQNANDSPAVFNRMRQAVRDAYGMELYIIGMQPQWQDFRFVGAVDAVTHNTYMQLNENNSYERIL------YFDKMVYGAWSYSQEALEFNLEYIPTISPSSNYKLQNPNNQNYIFEKNEKLFRSVCNAARGAVG----ESKMVLLESFNNWNIGTQIEESNAYGDQYLKIL | |||||||||||||
6 | 5ngwA | 0.17 | 0.15 | 0.87 | 1.67 | SPARKS-K | VGAFYKFP-------------NW--------------NLNYNEMPV-SGTYTAANTDQFPTHIRQANKAGINFFLFDLVSSQNFDIVARYNNELAGFPDSIVKYAFNYNYNPVDSTTDETTNTLDP----KEIVFQQDFLNIADLAENTNYYRLDGKPVVYILNALAANDSPAVFNRMRQAVRDAGME-LYIIGMQPQWQLRYDFRAVDAVTHNTYMQLNENNSYERILYF------DKMVYGAWSYSQEALEFNLEYIPTISPSSNYKLQNPNNQNYIFEKNEKLFRSVCNAARG----AVGESKMVLLESFNNWNIGTQIEESNEYGDQYLKIL | |||||||||||||
7 | 5ngwA | 0.16 | 0.13 | 0.84 | 0.71 | MAPalign | VGAFYK--------------------FPNWNL-------NYNEMPV-SGTYTAANTDQFPTHIRQANKAGINFFLFDLVSSQNGHSSFDIVARYNNELDSIVKYAFNYNYIVDSTTDETTNTLDP--K---EIVFQQDFLNIADLAENTNYYRLDGKPVVYILNAQNLAASPAVFNRMRQAVRDYNGMELYIIGMQQRYDFRFV-GAVDAVTHNTYMQ----------------LNEILFDKMVYGAWSYSSEFNLEYIPTISPSSNYKLQPNNQNYIF-EKNEKLFRSVCNAARGAV----GESKMVLLESFNNWNIGTQIEESNAYGDQYLKIL | |||||||||||||
8 | 6zdcA | 0.15 | 0.13 | 0.89 | 0.84 | CEthreader | LHVFYYSWYGNPQFDGKYI--HWNHPVLEHGRHNPPDDIGSSFYP-ELGSYSSRDPSVIETHMRQMRSASIGVLALSWYPDENGEPTDNLVPTILDKHKYNLKVTFHIEPYSNRD---------------DQNMYKNVKYIIDKYGNHPAFYRYKTLPMFYVYDSYITEKWANLLTTSGSRSIRNSPYDGLFIALLVEEKHDILQSGFDGIYTYFATNGFTYG---------------SSHQNWASLKLFCDKYNLIFIPSVGPGYIDTSIRPWNTQNTRNR---INGKYYEIGLSAALQT--RPSLISITSFNEWHEGTQIEKAVPKPGLYLELT | |||||||||||||
9 | 5ngwA | 0.16 | 0.14 | 0.89 | 1.46 | MUSTER | VGAFYKFP----------------NW-----------NLNYNEMP-VSGTYTAANTDQFPTHIRQANKAGINFFLFDLVSSQNFDIVARYNNELAGFTDSIVKYAFNYNPLGINNPVDSTTDETTNTLDPKEIVFQQDFLNIADLA-NTNYYRLDGKPVVYILNAQNLNDSPAVFNRMRQAVRDAYNGELYIIGMQPQRYDFRFVGAVDAVTHNTYMQLNENNSYER---ILYFDKMVYGAWSYSQEALGRSEFNLEYIPTISPSSNYKLQNPNNQNYIFEKNEKLFRSVCNAARGA----VGESKMVLLESFNNWNIGTQIEESNAYGDQYLKIL | |||||||||||||
10 | 4ad1A | 0.16 | 0.13 | 0.86 | 5.33 | HHsearch | TFCFYYDWYGS-EAIDQWAHAIAPDPNGGSGQN--PG-TIPGFYP-QLGRYSSSDPNILTKHMDMFVMARTGVLALTWWNEQD-ETEAKRIGLILDADKKKIKVCFHLEPYP------SR----------NVQNLRENIVKLTRYGNHPAFYRKDGKPLFFIYDSYLIE-----PSEWEKLLSNTAYDALMIGLWTSSPRPFILNAHFDGFYTYFAATGFT------------YGSTPTNWVSMQKWA---KENGKIFIPSVGPGYIDTRIRPWNSVIRTRTDGQYYDAM---YRKAIE---AGVSAISITSFNEWHEGSQIEPAVPYTDYYLTRT | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |