Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | RGQPLMPCSPPKARKLLRAGKAVPVRRTPFVIQLTVPTGETKQPITLGVDAGYKHVGLSATTAKEELLASEVELRQDVTGLLSDRLALRRARRNRKTRYRAPRFDNRVRSKHKGWLAPSVENRIQAHISRIEAVCRVLPITKIVIETASFDIQKIKNPEVEGTDYQQG |
1 | 2ap1A1 | 0.11 | 0.05 | 0.49 | 0.72 | DisCoVER | | ------------------------------------------NAMYYGFDIGGTKIALGVFDSRRLQWEKRVPT---------------------------------PHTSYSAFL--------DAVCELVEEADQRFVKGSVGIGIPGMP-ETEDGTLYAANVPAA- |
2 | 6m0vA | 0.17 | 0.12 | 0.70 | 0.83 | DEthreader | | -----------------------------------------GSDLVLGLDIGIGSVGVGILNKVGIIHKNSRIFPAQAENNLVRRTRQGPTDYGRYREIGILIGK-GWHN-----YNPVVAKSVRQAIKIVNAAIKEYGDFNIVIEMALT-GQ--SQRRHWGIKHHAF |
3 | 1jcfA | 0.08 | 0.08 | 1.00 | 0.70 | CEthreader | | FKPRVVIGRAILDAGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIVTWESIRIDEMDEAIVQYVRETYRVAIGERTAERVKIEIGNVFPLKGGEVREALRSVVVAIVESVRTTLEKTPPELIFLTGGGSLLRGLDTSVIRSEEPLTA |
4 | 6w5cA | 0.08 | 0.08 | 0.99 | 0.83 | EigenThreader | | SYEGKPALSQMRLEAARQQNLDFNINIVTLATKVKK-KKEKNYKVVLGYDANKNTYAAIEADYLPVKPIESGFVQLSYNGPHVESRRSFLEKYNMKDFEAIADDETSKLSVLKLSSLSKKEVIANKIVAKALELRDKY-GPVLIKGENIGAMAFLATYGLKKNDVLGV |
5 | 6m0vA | 0.18 | 0.13 | 0.71 | 0.57 | HHpred | | ----------------------------------------MGSDLVLGLDIGIGSVGVGILNKGEIIHKNSRIFPAAQAENNLVRRTNRQGRRLA--RRKKHRRVRLNRLEESGLITDFLRELFIALKNMVERYQTYGQLRDFTVEKNVFPTQQEFNPQITD------ |
6 | 3jc8Ma | 0.09 | 0.07 | 0.73 | 0.40 | MRFsearch | | ----------NDYTTVVSEAAPVVVDVDAFAVQNMFSVDVPERETVVLINAGASVVNINIISNGATVFTRDVTIGNQFTEEIQKQEEAEALKIG-----------------VPQDVERVLSSVAEQVAGEIQRSLDFYAFSKVYLSGGT------------------- |
7 | 1hjrA | 0.09 | 0.07 | 0.71 | 0.57 | FFAS-3D | | -------------------------------------------AIILGIDPGSRVTGYGVIRQVSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADS-----ALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQH- |
8 | 3p24A1 | 0.15 | 0.11 | 0.75 | 0.90 | SPARKS-K | | ASIDLQSVSYTDLATQLND-----VSDFGKMIILKDN--GFNRQVHVSMDKGREFAVLRFYRNGESISYIAYKEAQMMNEIAEFYAAPFKKTRAINEKEAFECIYDRTRSAGKYPV------------------------------SVKINVDKAKKILNLPE----- |
9 | 3gg4A | 0.13 | 0.06 | 0.45 | 0.64 | CNFpred | | -----------------------------------------LASYFIGVDVGTGSARAGVFDLGRMVGQASREITM--------------------------------FKPKADFVEQSSENIWQAVCNAVRDAVNQ-QVKGLGFDATC------------------- |
10 | 6jdqA | 0.20 | 0.14 | 0.70 | 0.83 | DEthreader | | -----------------------------------------SINYILGLDIGIASVGWAMVEIIRLIDLGVRVFER-AEVLAMARRLARSVRRLTRRH---A--VKMLG-FVQEIRNPVVLRALSQARKVINGVVRRYGPARIHIETAREKDRKEIEKRQEENR-R-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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