>PF14234 (321 residues) KDTVWTFDQLQGIFYVVVPVRMTVVKLQGGGLLVYAPVAPTRECIRLVKELVEQHGNVKY IILPTISGIEHKVFVGPFARYFANAQVFVAPNQWSFPLNLPLSWLGLPPKRTSLLPEDSR QTPFADEFDYAILGPVELGPGRFEEVAFFHRRSHTLLVTDSVVSVPEEPPAIVQLDPYPL LFHAKDNASDIVEDNQANRRKGWQRISLFALYFQPSVLEIPTWSEVFRNALKAPERSKKA YFGLFPFQWQEDWKRSFDALRGNGRLFVAPILQTLILNRAPKETIDWADKVASWDFQWII PCHFDSPIQAQPHQFRQAFSF |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | KDTVWTFDQLQGIFYVVVPVRMTVVKLQGGGLLVYAPVAPTRECIRLVKELVEQHGNVKYIILPTISGIEHKVFVGPFARYFANAQVFVAPNQWSFPLNLPLSWLGLPPKRTSLLPEDSRQTPFADEFDYAILGPVELGPGRFEEVAFFHRRSHTLLVTDSVVSVPEEPPAIVQLDPYPLLFHAKDNASDIVEDNQANRRKGWQRISLFALYFQPSVLEIPTWSEVFRNALKAPERSKKAYFGLFPFQWQEDWKRSFDALRGNGRLFVAPILQTLILNRAPKETIDWADKVASWDFQWIIPCHFDSPIQAQPHQFRQAFSF | |||||||||||||||||||
1 | 6h0cA | 0.10 | 0.07 | 0.69 | 1.47 | HHpred | AVDTTVFRSRTWDRGLGTTANSYLISAD--KIALFDPPGESDNFVGTLIQRL-DLNSLDYVILGH-VNANRAHTLKLLLSLAPQATIICSNPAAQNLEKLL----ADAENNPIQVMKGNDHLDLGRELTFIPTP----SPRYPGQLCTYDPRTEILFTDKLFGAHVCGD-QVFDEGW-------------------T----IYQE----------------------------------------------DRRYYFDCL----------------LAPAAAQVSAALNKLEAYPAQTYAPSHGP-LVRYGLELTRNYQQW | |||||||||||||
2 | 6h0cA1 | 0.08 | 0.06 | 0.70 | 1.05 | SPARKS-K | AVDTTVFRSRTWDRLKGTTANSYLISA-DKIALFDPPGESFDNFVGTLIQRL-DLNSLDYVILGHV-NANRAHTLKLLLSLAPQATIICSNPAAQNLEKLLADAEVNN---PIQVMKGNDHLDLGRGHELTFIPTP--SPRYPGQLCTYDPRTEILFTDKLFGAHV----------------CGDQVFDEGWTIYQEDRRYYFDCLLA----------------------------------------------------------------------PAAAQVSAALNKLEAYPAQTYAPSHG-PLVRYGLRELTRNYQQ | |||||||||||||
3 | 6h0cA | 0.10 | 0.07 | 0.69 | 1.46 | HHsearch | AVDTTVFRSRTWDRGLQTTANSYLISAD--KIALFDPPGESDNFVGTLIQRL-DLNSLDYVILGH-VNANRAHTLKLLLSLAPQATIICSNPAAQNLEKLL----ADAENNPIQVMKGNDHLDLGRELTFIPTP----SPRYPGQLCTYDPRTEILFTDKLFGAHVCGD-QVFDEGW-------------------T----IYQE----------------------------------------------DRRYYFDCL----------------LAPAAAQVSAALNKLEAYPAQTYAPSHGP-LVRYGLELTRNYQQW | |||||||||||||
4 | 2p97A | 0.10 | 0.06 | 0.59 | 1.32 | HHpred | RPDLYSWSTFNPAR--NIDFNGFAWIRPEGNILIDPVAL-SNHDWKHLE----SLGGVVWIVLTN---SDHVRSAKEIADQT-YTKIAGPVAEKENFPI-----------YCDRWLSDGDE--LVPGLKV--EL---QGSKTPGELALLL-EETTLITGDLVRAYRAGGLE------------------------------------------------------------------------------------------------ILPD----EKL-NKQKVVASVRRLAALEVEAVLVGDGW-SVFRDGDRLKELVAT | |||||||||||||
5 | 6qrqB | 0.15 | 0.11 | 0.70 | 1.05 | SPARKS-K | GQHKFMFLGWEEKEEEIVQTNQYLILDGNEGILLDPGGAVFPRVMSNVAEVV-DLSSIRHIFYTH-QDPDVTSGILLWLSICENAKIYISSLWVRFGIYDQKRIVPISDKGTKIKLLSGN------ELEILPAHF----LHSTGNFVLYDPVAKILFSGDIGAAVFEK-----------------GKRYRYVDD--------------------------------FERHLPLME---------------AFHKRYM---------------------SSNAACKKWVDMVSKKKIDMIAPQHGAVFRGESVKKFLEWFRN | |||||||||||||
6 | 1e5dA | 0.08 | 0.05 | 0.70 | 1.46 | HHsearch | IDGFHLVGAIDWYTLSPMGTNAYLVED-EKTTLFDTVKAEYGELLCGIASVI-DPKKIDYLVIQH-LELDHAGALPALIEACQPEKIFTSSLGQKAMESH----FHYKD-WPVQVVKHGETLSLGKTVTFYETR----MLHWPDSMVSWFADEKVLISNDIFGQNIAAS-ERFSDQI-----------------PVH----TLER----------------------------------------------AMREYYAN----------------IVNPYAPQTLKAIETLVGAAPEFICPDHGV-IFRGACFAVQKYVEY | |||||||||||||
7 | 6qrqB | 0.12 | 0.09 | 0.70 | 1.27 | HHpred | GQHKFMFLGWEEKEEEIVQTNQYLILDGNEGILLDPGGAHVPRVMSNVAEVV-DLSSIRHIFYTH-QDPDVTSGILLWLSICENAKIYISSLWVRFLPHF-----GIYDQKRIVPISKGTKIKLLSGNELEILP---AHLHSTGNFVLYDPVAKILFSGDIGAAVFEKGRYRYVD--------------------------DFER--------------------------------------------------HLPLM---E-----AF-HK-RYMSSNAACKKWVDMVSKKKIDMIAPQHGA-VFRGESKKFLEWFRN | |||||||||||||
8 | 6h0cA | 0.06 | 0.05 | 0.87 | 1.01 | SPARKS-K | AVDTTVFRSRTWDRLKFTTANSYLISA-DKIALFDPPGESFDNFVGTLIQRL-DLNSLDYVILGHV-NANRAHTLKLLLSLAPQATIICSNPAAQNLAEVNNPIQVM---------KGNDHLDLGRGHELTFIPTP--SPRYPGQLCTYDPRTEILFTDKLFGAHV--------------------CGDQVFDEGWTIYQEDRRYYFDCLLA-----PAAAQVSAALNKLEAYPAQTYAPSHGPLVRYGLRELTRNYQQWLSEAQALNVALIYASAYGNTSTLAQAIARGITKAGV-AVTAINAE---TSNAEEIKEAIGK | |||||||||||||
9 | 2ohiA | 0.14 | 0.10 | 0.70 | 1.46 | HHsearch | SDGVYWTGVLDWYHGYTLGTNAYLVCGDEGVALIDNSYPGTDELMARVEDALQQMERVDYIIQNH-VEKDHSGVLVELHRRFPEAPIYCTEVAVKGLLKH----YPSLREAEFMTVKTGDVLDLGGTLTFLETP----LLHWPDSMFTLLDEDGILFSNDAFGQHLCCP-QRLDREI-----------------PEY----ILMD----------------------------------------------AARKFYANL----------------ITPLSKLVLKKFDEVKELRIQMIAPSHGQ-IWTD-PKIIEAYTGW | |||||||||||||
10 | 1ycgA | 0.10 | 0.07 | 0.70 | 1.44 | HHsearch | TDGIYWVGAVDWFHGPSTTYNAYLIVD-DKTALVDTVYEPKEELIAKLKQIK-DPVKLDYLVVNH-TESDHAGAFPAIMELCPDAHVLCTQRAFDSLKAH----YSHID-FNYTIVKTGTSVSLGK-RSLTFIE---APMHWPDSMFTYVPEEALLLPNDAFGQHIATSV-RFDDQV------------------DA---GLIMD----------------------------------------------EAAKYYAN----------------ILMPFSNLITKKLDEIQKIAIKTIAPSHGI-IWRKDPRIIEAYARW | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |