>PF14121 (616 residues) LYMWRIKNQLGDRTMIPADTAYHHFQNTNLTDGLTGHYNYLANMGSPRMSRIFFDRRDPE PTIFMEPFSSFFIRPTEFNFTNSNVPYTNLTYHKAGNKVNGEERFKSYFSVNVNKRLAFG FNIDYLYGRGYYNNQSTSHFNAAFFGSYIGDRYQMQAIYSNNYLKTNENGGIEDDRYITA PEEMAQGQREYESTNIPTILSATTNRNHDFYVFLTQRYNLGFKRDIPQAENDTMPAKQEF VPVTSFIHTVQVERARHSFHSEDDVKDYYQNTYLEPDNPLVKDSTTYIGIKNTVGIALLE GFNKYAKAGLTAFASYKISKYTLMNLEGIGNDKYNENEIFVGGELSKREGNVLHYHAIGE VGLGGKAIGQFNVKGDIDLNFPLWKDTVSLIARGEVSNKLAPFYMRHYHSKHFWWDNDMD KEFRTRIEGELSIARWRTKLKAGVENIKNYTYFNQQALPEQKSGSLQVLSASLNQDFKLG IFHLDNEVTWQKSSDQTVLPLPDLSLYHNFYMQFKLAKKVLSVQLGADLRYFTKYNAPAY MPAIQNFHLQPTDDQVEIGGYPIVNVYANLHLKRTRFYVMMYHVNQGMSRPNYFLSPHYP INPRVLKFGLSWNFYD |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LYMWRIKNQLGDRTMIPADTAYHHFQNTNLTDGLTGHYNYLANMGSPRMSRIFFDRRDPEPTIFMEPFSSFFIRPTEFNFTNSNVPYTNLTYHKAGNKVNGEERFKSYFSVNVNKRLAFGFNIDYLYGRGYYNNQSTSHFNAAFFGSYIGDRYQMQAIYSNNYLKTNENGGIEDDRYITAPEEMAQGQREYESTNIPTILSATTNRNHDFYVFLTQRYNLGFKRDIPQAENDTMPAKQEFVPVTSFIHTVQVERARHSFHSEDDVKDYYQNTYLEPDNPLVKDSTTYIGIKNTVGIALLEGFNKYAKAGLTAFASYKISKYTLMNLEGIGNDKYNENEIFVGGELSKREGNVLHYHAIGEVGLGGKAIGQFNVKGDIDLNFPLWKDTVSLIARGEVSNKLAPFYMRHYHSKHFWWDNDMDKEFRTRIEGELSIARWRTKLKAGVENIKNYTYFNQQALPEQKSGSLQVLSASLNQDFKLGIFHLDNEVTWQKSSDQTVLPLPDLSLYHNFYMQFKLAKKVLSVQLGADLRYFTKYNAPAYMPAIQNFHLQPTDDQVEIGGYPIVNVYANLHLKRTRFYVMMYHVNQGMSRPNYFLSPHYPINPRVLKFGLSWNFYD | |||||||||||||||||||
1 | 6v81A | 0.11 | 0.10 | 0.87 | 1.33 | DEthreader | ----ELD-PA-V--VV-DGEEMRLATPRNLSESLTGQVQNRQNYAQDLQLSIGFGIRLPTMPDGQGQTSNIDLVMNVTTQTGQQPPTIEASSYYGSF---GSWRYGLKATGATGDDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDESKLSLIFNSVDIKADDPGGLT-KAEWK----------AN-PQQAPRAQYDTRKTIKQTQAGLRYERSLSS--------------------RDDMSVMMYAGERETTQYQ--SIPM--AP-QLNPSHAGGVITLQRHYQGIDSRWTHRGEL--GVPVTFTTGLNYENMSENRKGYELRRDERNLMWNIDPYLQTQWQLSEKLSLDAGVRYSSVWFSYHKWLPAGSLKYAMT---DAWNIYLAAGRGFETPTINELSYR----SGMNLLKPSTNDTIEIGSKTRIGLLSLALFQTDTDDEIVVDSGRTTYKNAGKTRRQGAELAWDQRFAGFRVNASWTWLDATYGNRMPGIARNMGFASIGYVP---EDG-WYAGTEARYMGDIMA-----------DDENT-A-KAPSYTLVGLFTGYKYNTVDLFGRVDNLFD---KEYVGSVYYEPSPGRNYGVGMNIAWRF | |||||||||||||
2 | 6v81A | 0.10 | 0.09 | 0.87 | 1.33 | DEthreader | ----EL--PA----VVDGEEMRLATPRINLSELTVLQVQNRQNYAQDLQLSIGFGGIRLYPATMGQGQTSNIDVMNVTTQTGQQPPTIEASSYY-GS--FGSWRYGLKATGATGGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDESKLSLIFNSVDIKADDPGGLTKAEWK-A----------N-PQ-QAPRAEDTRKTIKQTQAGLRYERSLS-------------------SRD-DMSVMMYAGERETTQYQ---SIP--MAPQLNP-HAGGVITLQRHYQGIDSRWTHRG-E-LGVPVTFTTGLNYENMSENRKGYELRRDERNLMWNIDPYLQTQWQLSEKLSLDAGVRYSSVWASYHKWLPAGSLKYAMT---DAWNIYLAAGRGFETPTINELSYR----SGMNLLKPSTNDTIEIGSKTRIGLLSLALFQTDTDDEIVVDSSGTTYKNAGKTRRQGAELAWDQRFAGFRVNASWTWLDATYGNRMPIARNMGFASIGYV-P----EDGWYAGTEARYMGDIMA-----------DDENT-A-KAPSYTLVGLFTGYKYNTVDLFGRVDNLFD---KEYVGSVYYEPSPGRNYGVGMNIAWRF | |||||||||||||
3 | 2gskA | 0.11 | 0.09 | 0.81 | 1.30 | HHpred | ------------------SIFIRGTNSHVLVLIDGVRLNLAGVSGSADLSQFPIAVQRVEYIRGPRS-AVYGDAIGGVVNIITTRDETEISAGWGS---NSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGYDVVAYFLSKTLYGALEHNFDAWSGFVRGYGYDNRTNYDAYYSPG-----S------------------PLLDTRKLYSQSWDAGLRYNGELIK-----------------SQLIT----SYSHSKDNYDPHY---GRYDS----S--A-TLDEMKQY--TVQWANNVIVG-----HGSIGAGVDWQKQTTTPGTGY--VEDGYDQRNTGIYLTGLQQV-GDFTFEGAARSDDNSQFGRHGTWQTSAGWEF---IEGYRFIASYGTSYKAPNLGQLY--G---FYGNNLDPEKSKQWEGAFEGLGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKARIKGVEATANFDTGPLTHTVSYDYVDARNTPLLRRAKQQVKYQLDWQL---Y---DFDWGITYQYLGTRYDKDYSSY-----PYQT---VKMGGVSLWDLAVAYPVTHLTVRGKIANLF----DKDYETVYGYQTAGREYTLSGSYTF-- | |||||||||||||
4 | 6fokA | 0.07 | 0.06 | 0.85 | 0.62 | DisCoVER | ---------------LAPSVVTGRQPVDGADKTIPGFAVIRNGGSNGDPVLRGMFGSRLLGACPNRMDATSYISPETREPERFLGSRVNASLLAGSN---GRFDKVLDAAAGN-RLGYLRFTGNHAQSYEDGVPSRWKKWNGDVAVGWTPDDTLIELTAGKGDGEA-RYAGR----------------------------GMDGSQFKRESLGLRFVKSNV-------------------DVLEKVEAQVYYNYADHIMDNFRLR-TPDPSSMM---PMPMASQVDRRTLGGRLAATWRW----DDFKLVTGVDAMRNEHRARGSKYDFPWSKDAVFHNYGAFGELTWFARDRLIGGLRLDRASVKDADTLPSGFVRYEHDLA-DSPTTLYAGLGHAERFPDYWELFSPKRGPNAFDKIKPEKTTQLDFGLQYNKLQAWASGYVGVVQDFILFSYRTQATNV--DARIMGGELGASYQLNWKTDASLAYAWGKNSSRALPQIPPLEARFGLTYE-EG--DWSAGSLWRVVAPQNRIARDQG-NV-VGKDF-----D-KSAGFGVFSLNGAYRVNVKLSAGVDNLFDKD--YTEHLNKAVPEPGRTFWTKVDFS--- | |||||||||||||
5 | 6v81A | 0.10 | 0.07 | 0.75 | 0.25 | MRFsearch | -------------------------------------------------------------------------------------PTIEASSYYGS---FGSWRYGLKATGATGGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDESKLSLIFNSVDIKADDPGGLTKAEWKANPQQAP-----------RAEQYDTRKTIKQTQAGLRYERSLS------------------SRDDMSVMMYAGERETTQYQSIPM---------APQLNPSHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNLRRDERNLMWNIDPYLQTQWQLSEKLSLDAGVRYSSVWASYHKWLPAGSLKYAMT---DAWNIYLAAGRGFETPTINELSYRADQSGMNLGLKPSTNDTIEIGSKTRDGLLSLALFQTDTDDEIVVDSGRTTYKNAGKTRRQGAELAWDQRFADFRVNASWTWLDATYNRMPGIARNMGFASIGYVPE-----DGWYAGTEARYMGDIMADD-------------ENTAKAPSYTLVGLFTGYKYNTVDLFGRVDNLF----DKEYVGSVYEPSPGRNYGVGMNIAWR- | |||||||||||||
6 | 6e4vA | 0.09 | 0.08 | 0.92 | 1.69 | SPARKS-K | DIPQSVTIVSQQRMEDQQLQTLGEVMENTLKSQADSDRALYYSRGFQIDNYGIPTYFESRWNLGDALSDMALF--ERVLMTGTGNPSAAINMVRAEYGSWNKERYVADLQSPLTEKIRARIVGGYQNNDSWLDRYNSEKTFFSGIVDADLGTLSAGYEYQRIDVNSPTWGGLPR-WNTDGS------SNSYDRARSTA-PDWAYNDKEINKVFMTLKQQFADT-----------WQATLNATHSEVEFDSKMMYVDAYVNKADGMLVGPYSNYGPGFDYVGGTGWNSGKRKVDALDLFADGSYELRQHNLMFGGSYSKQNNRYFSSWANLAQDDTTHMKSLYAATRVTLADPLHLILGARYTNWRVDTLEKNHTTPYAGLVFDINDNWSTYASYTSIFQPQ---------NDRDSGKYLAPITGNNYELGLKSDRLTTTLAIFRIEQDNVAQSTNGETAYKAVDGTVSKGVEFELNGAITNWQLTFGATRYIAEDNENPNLPRTTVKMFTSYRLPVMPE---LTVGGGVNWQNRVYTDTVTP--------YGTFRAEQGSYALVDLFTRYQVTNFSLQGNVNN----LFDKTYDTNVEVYGTPRNFSITGTYQF-- | |||||||||||||
7 | 2w78A | 0.09 | 0.08 | 0.91 | 1.11 | MAPalign | DQVLYRPDLGATMITSNIMDDFGLNNIDDVMRHTPGITVSAYDTDRNNYYARGIPSTARNVGYSAGNTLSDAIINLIR-KKPTHEFKGHVELGAGS---WDNYRSELDVSGPLSGNVRGRAVAAYQDKHSFMDHYERKTSVYYGILEFDLPDTMLTVGADYQDNDPKGSGGSF--------PLFDSQGNRNDVSRSFNNGAWSSWEQYTRTVFANLEHNF--------------------ANGWVGKVQLDHKINGYHAPLGA-IMGDWPAPDNSAKIVAQKYTGETKSNSLDIYLTGPFQF-LGREHELVVGTSASFSHWEGKSYTPSQYIDDKTRQLGSYMTARFNVTDDLNLFLGGRVVDYTGIRERFIPYVGAVYDL---NDTYSVYASYTDIFMPQDSWYRDS------SNKLLEPDEGQNYEIGIKGEYLNTSLAYFEIHEENRAYNPTNPAIAYKGIKAKTKGYEAEISGLAPGWQVQAGYTHKIIRDDSSTWEPQDQLSLYTSYKF--KGALDKLTVGGGARWQGKSWQMVYNNPRSRWEKF------SQEDYWLVDLMARYQIDKLSASVNVNNVF-DKTYYTNIGFYTSASDPRNLMFSTRWDF-- | |||||||||||||
8 | 2w78A2 | 0.10 | 0.10 | 0.93 | 0.66 | CEthreader | QSITVVTRQNMDDFGLNNIDDVMRHTPGITVSAYDTDRNNYYARGFSINNFQYDGIPSTARNVGYSAGNTLSDMAIYDIRKKPTHEFKGHVELGAGSWDNYRSELDVSGPLTESGNVRGRAVAAYQDKHSFMDHYERKTSVYYGILEFDLTMLTVGADYQDNDPKGSGWSGSFPL-------FDSQGNRNDVSRSFNNGAKWSSWEQYTRTVFANLEHNFANGW--------------------VGKVQLDHKINGYHAPLGAIMGDWPAPDNSAKIVAQKYTGETKSNSLDIYLTGPFQFLGREHELVVGTSASFSHWEGKSYWGTPSQYIDDKTRQLGSYMTARFNVTDDLNLFLGGRVVDYRTIRESGRFIPYVGAVYDL-NDTYSVYASYTDIFMPQDSWYRDSS------NKLLEPDEGQNYEIGIKGEYLNTSLAYFEIHEENRAEEDPAITYAYKGIKAKTKGYEAEISGELAGWQVQAGYTHKIIRDDSGKKVSTWEDQLSLYTSYKFKGALDKLTVGGGARWQGKSWQMVYNNPRSRWE------KFSQEDYWLVDLMARYQITKLSASVNVNNVDKTYYTNIGFYTSASYGDPRNLMFSTRWDF-- | |||||||||||||
9 | 2gskA | 0.10 | 0.09 | 0.84 | 1.34 | MUSTER | APTTVVTDRWQSTSVNDV--RLPGVDITQNGGSGQLSSIFI---GTNASHVLVL---RLNLAGVSGSADLSQFPIALVNII--TRDEPGTEISAGWG-SNSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGYDVVAYGNTGTLYGALEHNTDAWSGFVRGYGYDNRTN------------YDAYYSPGSPLLD-----------TRKLYSQSWDAGLRYNGEL-----------------------IKSQLITSYSHSKDYNYDPHYGRYDSSAT---------LDEMKQYTVQWANNVIVGH-------GSIGAGVDWQKQTTTPGTGYVEDGYDQRNTGIYLTGLQQVGD-FTFEGAARSDDNSQFGRHGTWQTSAGWEFI---EGYRFIASYGTSYKAPNLGQLYGFYG----NPNLDPEKSKQWEGAFEGLGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKARIKGVEATANFDTGPLTHTVSYDYVDATDTPLLRRAKQQVKYQLDWQLY------DFDWGITYQYLGTRYDKDYS--------SYPYQTVKMGGVSLWDLAVAYPVTHLTVRGKIANL----FDKDYETVYGYQTAGREYTLSGSYTF-- | |||||||||||||
10 | 2gskA | 0.10 | 0.09 | 0.84 | 2.32 | HHsearch | VTANRFEQPSTVLPTTVVSTSVNDVLRRLP----GVDITQNGGSGQLSHVLVLIDGVRLNLAGVSGSADLSQFPIALVVNIITTRDETEISAGWGS---NSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGYDVVAGFLSKTLYGALEHNFDAWSGFVRGYGYDNRTNYDAYYSPG----S----------------P---LLDTRKLYSQSWDAGLRYNGEL---------------------IKSQLITSYSHSKDYNYDPHY--GRYD----SS--A-TLDEMK--QYTVQWANNVIVG-----HGSIGAGVDWQKQTTTPGTGY--VEDGYDQRNTGIYLTGLQQV-GDFTFEGAARSDDNSQFGRHGTWQTSAGWEF---IEGYRFIASYGTSYKAPNLGQLY--G--FYGNPNLDPEKSKQWEGAFEGLGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKARIKGVEATANFDTGPLTHTVSYDYVDARNTPLLRRAKQQVKYQLDWQL---Y-D--FDWGITYQYLGTRYDKDYSSY-----PYQT---VKMGGVSLWDLAVAYPVSHLTVRGKIANL----FDKDYETVYGYQTAGREYTLSGSYTF-- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |