Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | LFLISLTMMFSCTKTVEFKGEVTEPMLVVNSIINPDSAFKVHVTKSRFFLDDAPISNVESANVRILKDDALIAELSHTVDGIYTVADITPEAGQKYQIEVSAPGYDDTRAEAMIPTTVAIASLDTATVTHEEYWDEMFEIGVKINDPANTENFYRVSAYLDSYIFDEQTGDYWHYRDYIWLSSEDPVITGGENSGDIFDVGYYNEFRIFNDSYFEGQSYTVKFMSDRWQLSTEHPESFFLIHVYLESLSEEYFTYLRSRAMHNNNEDNPFVEPVPVYSNIENGIGFFGGYASSHY |
1 | 2i07A | 0.09 | 0.07 | 0.80 | 1.29 | CNFpred | | MYSIITPNILRLE---------SEETMVLEAHDAQ-GDVPVTVTVHDF---PGKKLVLSSEKTVLTPATNHMGNV------TFTIP-----RNKFVTVQATFG-TQVVEKVVLVS--LQSGYLFIQTDKTIYTPGSTVLYRIFTVNHLPVGRTVMVNIENPE--------GIPVKQDSLSSQNQLGVLPLSWDIPELVNMG--QWKIRAYYENSPQQVFSTEFEVKE--------YVLPSFEVIVEPT-EKFYYIYN-------------EKGLEVTITARFVEGTAFVIFGIQD |
2 | 3afgA2 | 0.11 | 0.04 | 0.34 | 0.55 | DisCoVER | | ------------------------------------------------------------------------------------------------------------------A-KLTF----TGY----VSNKGSQSHQFTISG----AGFVTATLYWDNS----------GSDLDLYLYDPGNQVDYS-----YTAYYG-FEKVGYYN--PT--AGTWTIKVVSYSGS-------ANYQVDVVSDG---------------------------------------SLGQ--- |
3 | 2pn5A | 0.05 | 0.03 | 0.67 | 0.83 | DEthreader | | -PESLVQPRLGVPT-NVKFV-NILVLDY-----------------ATLLQGYMQTAENY-----FIDADKNERFALLSFVMAKDGIPV------NQRYGLTAEQIDGLE-V-----ENRFQLDLEKQNTGSD-YELRLKVCASYIPQLTDRSNMALIEVTLP-S--------GYVVDPISEQTKVNPIQKT-E--IRYGGTSVVLYYDNM---G---SERNCFTLTAY-RRFKVALKRPAYVVVYDYYN---------------------------------------TNLNAIK |
4 | 4plnC1 | 0.08 | 0.03 | 0.34 | 0.36 | CEthreader | | ----------------GSDETRVPEVPSSLHVRPLVTSIVVSWTPPENQN-----IVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIE-NLDPSSHYVITLKAFNGIPLYESAVTRPHTVPDP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
5 | 2geeA | 0.14 | 0.08 | 0.59 | 1.00 | EigenThreader | | -----------------PRGSHMEVPQPLSFVDITDSSIGLRWTPLN-------SSTIIGYRITVVAAGPIFEDFVDSSVGYYTVTG--LEPGIDYDISVYTGESTPTTLTQQTAVPPPTDLRFTNIGP-------DTMRVTWAPPPSIDLTNFLVRYSPVKNEEDV-------------------------------------AELSISP-----SDNAVVLTNLL---------PGTEYVVSVSSVYE-------------------------------------QHESTPLR |
6 | 6cd2C | 0.08 | 0.04 | 0.48 | 0.35 | HHpred | | ------------RFYLFRAIPRWRANLTLGENNINSWSYTASLE-SMLPPRLRGYAAETNARVVVSQQGRVLYDS-MVPAGPFSIQDLDSSVRGRLDVEVIEQNGRKKTFQVSVPYLTRPGQVRYKLVSGGPGLSNQWSLYGGAVLA---GDYNALAAGA--------------------------------------------------------------------------------------------------------------------------------------- |
7 | 6fwvA | 0.10 | 0.07 | 0.68 | 0.58 | MRFsearch | | -------------------------KISTDLVVNWESVGSLKIKLGE------KKEVLKGAVFEVSNENFKQNVTTS-DKGIAELGNL---PIGIYSVKEIQADRSVKKIEVKT---GETAVLELKNEN------VKGELEITKVDVADPNAEFTIYNEVVKGKTDEKGVAKFKLPGKYTYKETI-------------GYVINEETFAFEIKE-NGEIIKHIVQDK-----------KVEGELEITKVDVAD-------------------------GNTKLPNAEFTIYNEQG- |
8 | 6cd2C | 0.10 | 0.08 | 0.79 | 0.59 | FFAS-3D | | ------------------AIPRWRANLTLGENNINSDIFRASLESMLPPRLRGYAPQITNARVVVSQQGRVLYD-SMVPAGPFSIQDLDSSVRGRLDVEVIEQNGRKKTFQVDTASVPYLTRFATGEASWGLSNQWSLYGGAVLAGDY-------NALAAGAGWDLGVPGTLSADITQSVARIEGE-------------------------RTFQGKSWRLSYSKRFDD-----------ITFAGYRFSERNYMTMEQYLNARYRNDYSSREKEMYTVTLNKNTSFNLQYSRQTY |
9 | 4b5zA | 0.11 | 0.10 | 0.88 | 0.82 | SPARKS-K | | TVEIGSIEGHNNTNKVEPHAGQR---AVLKYKLKQGDYFDFTLSNNVNTHGVSTARKVPE----IKNGSVVMATGEVLEGGKIRYTDVTAETNGNQTITSTLNE-EQTSKELDVYKDGIANLNGSIETFNKANNRFSHVAFIKPN--NGKTTSVTVTGTLMKGSNQNGNQPKVRIFEYLGNNEDIAKVYANTTDTSKFKEVTLQNNGSYSLNIENDKTYVVHYDGEYLN---GTDEVDFRTQMVGHPEQLYKYYYDRGYTLTWDNGLVLYSN----------------------- |
10 | 5f7uA | 0.10 | 0.08 | 0.81 | 1.28 | CNFpred | | DSITLNMTATA---------GDFSPKLYLSFEDL--DTLRMELSPTGKETGHAGK-----SGYTVEDTAEKVTVTTE--DLSIEIQK------SPYRMEVHQADGTLLTSEYT-----TANSLGWLTDG----KNVINQYQNNFMTP-SDEAFYGFGERYDTINQR--GKDVETYVYNEYQDQTERTYLAVPFFVSKYGMYVNSFHSQFQMASKVEDKYSFVLDNDGD--------MTNMLDYYVISG-KDQNDIVNNYTDIT-------GKTTLLP---KWAFGLWMSANEWDR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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