Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | MYATLEEAIDAAREEFLADHPDLEQDEANVQQFNVQKYVLQDGDIMWQVEFFADEGEDGECLPMLSGEAAQSVFDGDYDEIEIRQEWQEENTLHEWDEGEFQLEPPLDTEEGRTAADEWDER |
1 | 4exrA | 0.11 | 0.07 | 0.69 | 0.75 | DisCoVER | | FKVPYTDAINIF---KD----------KYKDADIVDLSLERDLNKFVYTVEGVDD--NNEYKKIDANTKDVLED------------------KTEKLLNGVAREKLPGIVKE--WS--LDK- |
2 | 2g18G | 0.07 | 0.05 | 0.74 | 0.83 | DEthreader | | --PLIRQLADCIEEVWHQHL-DL---SPYCYKMHLE-LAKVG-LDILHCV-MFPRYLPMFGCDLV----------------GGRGQ-I--SAAIVEFLGRVF----YCSKQQNDKTRRVLKA |
3 | 5boiA | 0.07 | 0.07 | 0.93 | 0.61 | CEthreader | | REVSEDVAKQVARSFL---------NLKGNEQIHIVKSGKDADYEVYSLTITDPKTNQETYMDITQKGGYPLWVLEDRDIKLNDAMNKATKFLKDHRFESLVMAESAQYDNMGVFTFVEQTE |
4 | 6qm7A | 0.05 | 0.04 | 0.88 | 0.62 | EigenThreader | | VEIPIAVLAKRMGDKAQVRT-QQAGLRPMGVVSTFIMDQSDQDGKPQIYTVDP----AGWTGGHILEKRQKSTELDALTQKEAAMIA---LAALQS---AIGTAVKAVEEWLTAVAEA---- |
5 | 1nnvA | 0.24 | 0.13 | 0.55 | 0.39 | HHpred | | -KLDPDTAIDIAYDIFLEMAGENL-DPADILLFNLQGGVEVETADDWEEEIG-VLIDPEEYAEVWVGLVN---------------------------------------------------- |
6 | 3ppnA1 | 0.17 | 0.11 | 0.61 | 0.60 | MRFsearch | | ---DPKKALNIVQNEFQKRF-----------------------SYKWFDSY------GFDCSPVIPEKVVINKLIGQIDTETMQELNYEVDGK---------------LKEPSVVAKEFLEK |
7 | 2qztB | 0.15 | 0.12 | 0.80 | 0.45 | FFAS-3D | | ---SVETIIERIKARVGAVDPNGPRKVLGVFQLNIKT---ASGVEQWIVDVDQGVFASPDVTVTVGLEDMLAISGKTLTVGDALK------------QGKIELS--GDADLAAKLAE----- |
8 | 1pz4A | 0.10 | 0.08 | 0.80 | 0.81 | SPARKS-K | | MSLKSDEVFAKIAKRLE----SIDPANRQVE--HVYKFRITQGVKNWVMDLLVESDDAAEATLTMEDDIMFAIGTGALPAKEAMAQ------------DKMEVDGQ------VELIFLLEPF |
9 | 3ouuA | 0.17 | 0.08 | 0.48 | 0.51 | CNFpred | | --KDLEKAYWSAESEAMTAF--------GDGTMYMEKYIQ--NPRHIEVQVIGDS--FGNVIHVGERDCSMQR------------------------------------------------- |
10 | 4kk2A | 0.07 | 0.07 | 0.91 | 1.00 | DEthreader | | L-SQFMQVYETLKSELIHDLFEFSRQWVMIYVPMGYSDSLLGEELSSGWEWAYVDGILLRHV---------ILKKHFRG-YVLVDLFNEVYLPCALMFGEDLHVEVVIVQAVLKSFLGKIRK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|