>PF13886 (198 residues) VIAGVAIGIGLTITFFGYRLIRPCIFVTGFIIGSVVFFLAAESIFSNSDSIEVICWVAFA IGGLLVGFLLVWLYYVGIFALGALSGVLLATQFHNSFGYLIYPSHPNVVLYILMGVFGLT LGLIALKIERPFLVFATSCIGAIAAVWGIGFFAGGYPNTAYLQNTYSNGHWDYDIPTNWW YYLAGMVVLCILGMIVQF |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | VIAGVAIGIGLTITFFGYRLIRPCIFVTGFIIGSVVFFLAAESIFSNSDSIEVICWVAFAIGGLLVGFLLVWLYYVGIFALGALSGVLLATQFHNSFGYLIYPSHPNVVLYILMGVFGLTLGLIALKIERPFLVFATSCIGAIAAVWGIGFFAGGYPNTAYLQNTYSNGHWDYDIPTNWWYYLAGMVVLCILGMIVQF | |||||||||||||||||||
1 | 6u0oA | 0.11 | 0.10 | 0.96 | 1.14 | SPARKS-K | FQWAMTIFVFFVITMALSIMLRDVTDLAPLIAAIICILVQLAGLKFSISLKVIERLLLALILPLIILIIGMYSFNTFHILIGHILMAFVVEFGFRSYLQNIVETKMNT--FFASIVVGLMYSVFEFAAYNFLYTFSFSMILGELIYIATTFHASMTFGLIFLFSEEIGDL------FSIKVIAISTAIVAVGYIGLSL | |||||||||||||
2 | 3rkoB | 0.12 | 0.12 | 0.97 | 1.19 | CNFpred | LGGAVGKSAWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQRVLAYSTMSQIGYMFLALGVQAWDAAIFH----LMTHAFFKALLFLASGSVILAC-KSIPLVYLCFLVGGAALSALPVTAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHG | |||||||||||||
3 | 4zowA2 | 0.06 | 0.05 | 0.84 | 0.68 | DisCoVER | -DYKLVLKNRFVAGALALGFV--------SLPLLAWIAQSPIIIITGEQLSSYEYGLLQVPIFGAL--------IA-GNLLLSLIMGGWPIMIG-LLVAAAATVSHAYLWMTAGLSIYA-FG--IG-----LANAGLVRLTLFASDMTVSAMGMLQMGIEISKHAWLNGGNGLFNL--FN--LVNGILWLSLMVIFL- | |||||||||||||
4 | 3rkoN | 0.10 | 0.08 | 0.83 | 0.83 | DEthreader | TV-LN--LV--W------DGFAMLYTGLVLLA-S---C--------GYNDNKDEFYLLVLIAALGGILLANANGVVMRLFL-L--AF-SII-GNLMALSQTNIKRLL-GYSSISHLGYLLVALIALQTGEMSMEAVGVYLAGYLFSSLGAF----GVVSLMSSPYRGPDADSLFYLAAMTVMMLSLGTLGILGWPQIS | |||||||||||||
5 | 3b9zA | 0.14 | 0.14 | 0.99 | 0.46 | CEthreader | INILAMLLVGFGFLMVFVRRY-GFSATTGTYLVVATGLPLYILLRANGIDAVIYAEFAVATGLIAMGAVLLRVFQYALLALFIVPVYLLNEWLVLDNASGLTEGFQDSAGSIAIHAFGAYFGLGVSIALTDATSDRFSMLGSMVLWLFWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKASIVDMA | |||||||||||||
6 | 3qf4A1 | 0.06 | 0.06 | 0.91 | 0.92 | EigenThreader | ----------------GGGSVLAPLFMVVEVICQPTLLARIVDEGIARGD-FSLVLKTGILMIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGNFRKANESLRRSIISAFSLIVFALPLFI | |||||||||||||
7 | 5a40A | 0.14 | 0.08 | 0.59 | 0.19 | HHpred | ----------------TYAPLNFIAIGIGATLGAWLRWVLGLKLNGGWPWGLTANLVGGYLIGVMVALIASHPEWPAWIRLAAVTGFLGGLTTFSTFSADMLC-RGVYATYAASLAGSLAMTGLGLATVRLLL----------------------------------------------------------------- | |||||||||||||
8 | 5tsaA | 0.14 | 0.13 | 0.87 | 0.28 | MRFsearch | --GFAATALGALMALGLRASARTQDAMLGFAAGMMLAASAFSLILPGPGPAAAAVVALGLGLGVLLMLGLVWLFVLTIILHNLPEGMAIGVSFATAVALALRAIGRAVLVAVASGLMEPLGALVGVGIFALAYPISMGLAAGAMIFVVSHEVH---------------------ETTATVGLMAGFALMMFLDTAL-- | |||||||||||||
9 | 4pgrA | 0.08 | 0.08 | 0.91 | 0.97 | FFAS-3D | -MQRILTVFVFTLLIAT-----VGLFIGQLSILEVAMIILAFWMRRRKAVGYAFVYTFAFVSGITLFPIVSHYASIAYVVLEAFGSTFVIFAVLGTIGAKMKKDLSFLWSFLLVAVLALAVVGIFNIFSPMAYSVIGTIVFSLYILYDLNQIKHRHITEDLIPVMA---------LSLYLDFINLFILLRFFGIL--- | |||||||||||||
10 | 5ogeA | 0.09 | 0.09 | 0.92 | 1.10 | SPARKS-K | VMLFVQSLVCTITLIILRTDAKNWFPISFLLVLMIYTSSKALQYLA-----VPIYTIFKNLTIILIAYGEVLFFVLSSVVATWYFWMFTNCITSALFVLIMRTNFKDFDTMFYNNVLALPILLLFSFCVSLTAMIISGVASVGISYCSGWCVRVTSSTTYSMVGALNK----------LPIALSGLIFLSILSIFIGF | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |