>PF13871 (277 residues) NTLDQLIDDLGGPENVAEMTGRKGRVVSTEEGDIKYESRSEVDIPLETLNITEKQRFMDG EKDVAIISEAASSGISLQSDRRVKNQKRRVHITLELPWSADRAIQQFGRTHRSNQVSAPE YIFLISDLAGERRFASVVAKRLESLGALTHGDRRATETRDLSQFNIDNKYGRAALEATMK TIMGYESPIVPPPSDYKRDFFKDVAGALVGVGIITNNEVSPGMLILDKDYNNMSKFLNRI LGMPVELQNRLFKYFTDTLAAIVIQAKKAGRFDLGIL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | NTLDQLIDDLGGPENVAEMTGRKGRVVSTEEGDIKYESRSEVDIPLETLNITEKQRFMDGEKDVAIISEAASSGISLQSDRRVKNQKRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYIFLISDLAGERRFASVVAKRLESLGALTHGDRRATETRDLSQFNIDNKYGRAALEATMKTIMGYESPIVPPPSDYKRDFFKDVAGALVGVGIITNNEVSPGMLILDKDYNNMSKFLNRILGMPVELQNRLFKYFTDTLAAIVIQAKKAGRFDLGIL | |||||||||||||||||||
1 | 5jxrA2 | 0.17 | 0.12 | 0.70 | 1.10 | HHpred | RLLDILEDYCVFGYKYCRIDGSTAH-----------ED---------R--IAAIDEYNKPDKFIFLLTRAGGLGINLTTAD--------IVILYDSDWNPQADLQAMDRAHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQQGRAQVAAAAA---------NKDELLSMIQH-----GAE--------KVF--------QTKGAFGTM----AEKGSQLDDDDIDAILQA---------------GETRTKELNARYEKLGID----- | |||||||||||||
2 | 6bogA | 0.13 | 0.10 | 0.76 | 1.06 | CNFpred | ATALQLEQVLREGIRAAVFHE-----------GMSIIE-----------RDRAAAWFAEEGAQVLLCSEIGSEGRNFQF--------ASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAF---------------EHTCPTGRTIYDSVYNDLINYLASPDQTE------GFDDLIKNCREQHEALKAQLE--------------QGRDRLLEIHSN-GGEKAQALAESIE-NLIAFAMNLFDIIGINQDDR | |||||||||||||
3 | 1wp9A | 0.07 | 0.06 | 0.83 | 0.57 | DisCoVER | GKTLIAMMIAELGGKVLMLAKVLHAFRLF-NLPPEKIVA----LTGEKSPEERSKAWA--RAKVIVATPQTIENDLISL------EDVSLIVFDEAHRAVG---AYVFIAREYKQAKNPLVIGLTAVKGIRFEWVRVDLPEIYAILLETQGLSALRAYILLAKDHPKMDKLKKIIV--FTNYRETAKKIVNELVK----GI---K--AK--RFVGFARGFNVLVATSVGEVFYESAIRSIQRRGRTGRH-MP--GR-VI-------------ILMA- | |||||||||||||
4 | 3odmA | 0.06 | 0.04 | 0.71 | 0.67 | DEthreader | QHMIDFEGK----------PGRVTPRIP----RMSSITNVKEGTPAISEKLDLNSVR------IIPL---------DHYEIEKSKIL-LRIMIARS------VL-AVDAYKGEKHGV-ISPILGCGSLPFRGHFNEILATYSGQSKPRNFSE--E-----D----LMKEFIGICSKHYLQTFL-K----VI-----DT-VSFVSDFI----ANLDNSKEYA-VP--------------RAISFTGAMYMPPELMGMGRALNEIKTKYGQEGI-KLIY | |||||||||||||
5 | 3dinA | 0.11 | 0.11 | 1.00 | 0.43 | CEthreader | KIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEEGQPIQHPMLSKLIESIRKTLMEMDDVLDKQRRAVYSLRDQILLEKDYDEYLKDIFEDVVSTRVEEFCSGKNWDIESLKNSLSFFPAGLFDLDEKQFSSSEELHDYLFNRLWEEYQRKKQEIGEDYRKV | |||||||||||||
6 | 7jl1A | 0.12 | 0.08 | 0.72 | 0.58 | EigenThreader | NPKLEDLCFILPETITILFVGNPKLSILTGRGQNTG-------MTLPAQ--KCILDAFKGDHNILIATSVADEGI--------DIAQCNLVILYEYVGNVIKMIQTRGRG----RARGSKCFLLTS-NAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREK------ILHIQTHEKFIRDSQEKENKECHYTVLGDAFKEC--------FVSRPHPKPKKRAKIFCARQNC-----------------------------------------SHD | |||||||||||||
7 | 6ryrW | 0.20 | 0.09 | 0.47 | 1.15 | HHpred | KMLDLLEDFLEHGYKYERIDGGIT----------------G------NMRQEAIDRFNAPGAQCLLSTRAGGLGINLATAD--------TVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRGGGGGGGGGGG-------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 3dmqA | 0.18 | 0.12 | 0.70 | 0.52 | MRFsearch | -TALQLEQVLRERE--------GIRAAVFHEGSIIERD-------------RAAAWFAEEGAQVLLCSEIGSEGRNFQF----------ASHVFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFE--------------------GRTIYDSVYNDLINYLASPD------QTEGFDDLIKNCREQHEAL------------------KAQLEQGRDRLLEIGGEKAQALAESIEENLIAFANLFDIIG------- | |||||||||||||
9 | 3dmqA1 | 0.17 | 0.11 | 0.64 | 0.70 | FFAS-3D | --FDPRVEWL---GYLTSHRSQKVLVIREREGIRAAVFHEGSIIERD----RAAAWFAEEDAQVLLCSEIGSEGRNFQFASHV----------FDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGR---------------TIYDSVYNDLINYLASPDQT---------------------------------------------------------EGFDDLIKNCREQHEA-LKAQLEQG------- | |||||||||||||
10 | 6kw5Q | 0.16 | 0.10 | 0.62 | 0.59 | SPARKS-K | QVMDIMEDFLRMKDLYMRLDG---------------------STKTEE-RTEMLNAFNAPYFCFLLSTRAGGLGLNL--------QTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGKFDNKSTAEEQE------------AFLRRLIESEELDD-------DELNDTLADEKILFDKIDKERMNQE------------------------------------------------------- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |