Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | FCVVYLIALVGNLIILFVIWTDRSLHQPMFYFLAMLSMIDLSLSTATIPKMLGIFWFSLQELCFGCCVAQVFFIHFFTVMESIVLLAMGFDRYVAICNPLRYTMILTNRIIAVIAVIVVIRSLCMIVPIIFLLLRLPYCGHRIIPHTYCEHMGVARLACASIRANVYYGLGNISILFLDVLLIIVSYSRILYAVFHLPSKDARLKALNTCSSHICVIFAFFGPALFSFLTHRFGHNIPQYIHILLANLYVVIPPALNPVIYGIRTKQIQQRVKHLLAKK |
1 | 2ks9A | 0.18 | 0.18 | 0.96 | 1.50 | DEthreader | | YTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPL--QPRLSATATKVVICVIWVLALLLAFPQGYYS-TTET-----PSRVVCMIEWP--EHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWDRYHVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPYLFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCC |
2 | 6kp6A | 0.19 | 0.19 | 0.96 | 4.37 | HHpred | | TGSLSLVTVVGNILVMLSIKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTVYTIKGYWPLGAVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPARRTTKMAALMIAAAWVLSFVLWAPAILFWQFVV--GKRTVPDNQCFAQFLS---------NPAVTFGTIAAFYLPVVIMTVLYIHIYLASRSRVHAARERKVTRTIFAILLAFILTWTPYNVMVLVNTFCQSCIPDTVWSIGYWLCYVNSTIRPACYALCNAEFKKTFRHLLLCQ |
3 | 3d4sA1 | 0.18 | 0.17 | 0.92 | 0.59 | DisCoVER | | MSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITFKY-QS-LLTKNKARVIILMVWIVSGLTSFLPI--QHWYRATAINCYAETCCD-----FFTNQA--YA---IASSIVSFYVPLVIMVFVYSRVFQEAKRQL-----LKEHKALGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELL--- |
4 | 6kp6A1 | 0.19 | 0.18 | 0.96 | 0.17 | MRFsearch | | -GSLSLVTVVGNILVMLSIKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTVYTIKGYWPLGAVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPARRTTKMAALMIAAAWVLSFVLWAPAILFWQFV--VGKRTVPDNQCFAQ--------FLSNPAVTFGTAIAAFYLPVVIMTVLYIHIYLASRSR-VHGRERKVTRTIFAILLAFILTWTPYNVMVLVNTFCQSCIPDTVWSIGYWLCYVNSTIRPACYALCNAEFKKTFRHLLLCQ |
5 | 6kp6A1 | 0.17 | 0.16 | 0.96 | 2.33 | SPARKS-K | | TGSLSLVTVVGNILVMLSIKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTVYTIKGYWPLGAVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPARRTTKMAALMIAAAWVLSFVLWAPAILFWQFVVGKRTVPDNQCFAQ----------FLSNPAVTFGTAIAAFYLPVVIMTVLYIHIYLASRSRVHGR-ERKVTRTIFAILLAFILTWTPYNVMVLVNTFCQSCIPDTVWSIGYWLCYVNSTIRPACYALCNAEFKKTFRHLLLCQ |
6 | 4n6hA2 | 0.14 | 0.14 | 0.95 | 0.63 | MAPalign | | YSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATST-LPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAV--TRPRDGAVVCMLQ-------FPSPSWYWDTVTKICVFLAFVVPILIITVCYGLMLLRLRLSGKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDIPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQLC--- |
7 | 2ziyA | 0.17 | 0.16 | 0.97 | 0.36 | CEthreader | | IGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAY------TLEGVLCN---CSFDYISRDSTTRSNILCMFILFFGPILIIFFCYFNIVMSVSNHAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWV |
8 | 3d4sA1 | 0.19 | 0.18 | 0.96 | 1.67 | MUSTER | | MSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH----WYRATHQEAINCYAEE----TCCDFFTQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR--QLLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCL- |
9 | 6kp6A | 0.18 | 0.18 | 0.96 | 1.38 | HHsearch | | TGSLSLVTVVGNILVMLSIKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTVYTIKGYWPLGAVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPARRTTKMAALMIAAAWVLSFVLWAPAILFWQFVVGK--RTVPDNQCFAQFLS--------NPAVTFGTAIAAFYLPVVIMTVLYIHIYLASRSRVHAARERKVTRTIFAILLAFILTWTPYNVMVLVNTFCQSCIPDTVWSIGYWLCYVNSTIRPACYALCNAEFKKTFRHLLLCQ |
10 | 3emlA1 | 0.18 | 0.18 | 0.96 | 2.26 | FFAS-3D | | ELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQSQGCGEGQVACLFEDVVPMN--------YMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAP--LWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|