Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | PVTWMDNPIEIYVNDSVWVPGPIDDRCPAKPEEEGMMINISIGYRYPPICLGRAPGCLMPAVQNWLVEVPTVSPISRFTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEIPKESKNTEVLVWEECVANSAVILQNNEFGTIIDWAPRGQFYHNCSGQTQSCP |
1 | 2wjsA1 | 0.02 | 0.02 | 0.76 | 0.74 | DisCoVER | | SVSCVRTYRPEIKKG-SY--------------------------NNIVVH-V--KTAVADNLLFYLG-SA----KFIDFLAIEMRKGKVSFLWDVGSGVGRVEYPLTIDDSYWYRIEASRTGRNGSISVRALDGTYHSVSPLDAMLFVGGFTGCMGKEGDCK-----G- |
2 | 2i3oD | 0.04 | 0.03 | 0.70 | 0.67 | DEthreader | | SRPNALSSVIASSLCGDLFISWEIFFRRPLIGKPVETSS-------------GDTTYFSISRSVSACVE-KEHD--LYASLGSVQILEI------DNTDPQAILDKPRWTEP-----------------EFGTA--QITTLIRDVVVGAADPRG-DGIAIP-------- |
3 | 3jcrL | 0.03 | 0.03 | 0.85 | 0.61 | CEthreader | | -------------------------KSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEIL |
4 | 5mc6j | 0.09 | 0.08 | 0.85 | 0.63 | EigenThreader | | SVDISERGLIATGFNNGTYNFESQHSMINN----SNSIRSVKFSPQG-------------SLLAIAHDSNS----FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWHCDDIEIEEDILAVDSLAEPGVFDVKFLKADLNESLCCVCLDRSIRWFAGGK----- |
5 | 5yysA | 0.16 | 0.12 | 0.77 | 0.35 | HHpred | | -----------------RKSTPKLDVYQIVWGRSPVRIDMAGGTDTPPYSLYSGNGQPPLQVYVKP----CKDFHI---VLRSIDMGAM--EIV-STF----DELQDYKKIGSPFSIPSLAGFAPAFSA-VSYASLEEQLKFGAGIEVTLLAPAGSGLGTSS------- |
6 | 3jcrL | 0.12 | 0.06 | 0.48 | 0.58 | MRFsearch | | -------LCKLWSVP-------------------DCNLLHTLRGHVGAIVFHPKTVSLDPKDVNLASCA------------------------------------------------------GSVKLWSLDSDEPVADIEGHVRVARVMWHPSGRFLGTT-------- |
7 | 1w0sA | 0.10 | 0.09 | 0.91 | 0.29 | FFAS-3D | | --TWAPCSVTSQLRYRRCVGWNGQCSGKVAPGTLEWQLQACEDQQCCP------EMGGWSGWGPW----EPCSVTCSKGTRTRRRACNHPAPKCGGHCPGQAQESEACDTQQVCPTHGAWATWGP---WTPCSHEPKETRSRKVAGGWGPWGPVSPCPVTCGLGQTTC- |
8 | 3on9A | 0.09 | 0.08 | 0.89 | 0.63 | SPARKS-K | | -GSFNSIDVEINMYPVN------KTSCNSSIGS-----SSTISTSELTITLTHED--CTPVFIGDYYSVVDK---LATSGFFTNDKVHDLTTQCKINLEIKNSGRESRQLTPTTKVY--LMPHSETVTVVGDCLSNYIVYANTDAIMDVVAYHTSYILNVDHIPPNDCE |
9 | 5kzwA | 0.09 | 0.03 | 0.33 | 0.64 | CNFpred | | ---------NLYGSHPFYLALED----------GGSAHGVFLLNSAMDVVLQP------SPALSWRSTG------GILDVYIFLGP----------------------------------------------------------------------------------- |
10 | 4a01A | 0.04 | 0.03 | 0.78 | 0.67 | DEthreader | | --AQWLLVSVQISGSFLFEYKVGMVAFAIIFASTVSLLVTVSLMKIATNATKDDDNGDNVGIAGMSDGAEC----------------LQLLGLIIGFVTEYYTPVQ-A-GSDNAGGIAEMA------RRTLDAGNTTAAKIFSMTMV----------AISSNGPLNI-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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