Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | YLLLSFPLGIAYFVFLTTGLSLGTGLLVVFVGVPILIGVLFACLGLGAFERRMASSMLHLSIPSPPVLVSGPGLSAKLKALFGDATTWKSFFYLLLKFPFGVAVFVVLVTAFSVSLALILAPLTYSTLSMDFGLWRVDSKDEATIWCLIGVVLLLVSFHLVNGLAFVWGRFAQMML |
1 | 3rkoB | 0.16 | 0.14 | 0.91 | 1.09 | CNFpred | | --AMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTEVLHLVGIVGAVTLLLAGFAALVQ-----------TDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILAC-IFKMGGLRK-SIPLVYLCFLVGGAALSALPLVTAGFFSKDEILAGAMA |
2 | 5llmA1 | 0.09 | 0.05 | 0.56 | 0.70 | DisCoVER | | LTVLAVILG--------------------------------------------VVLGFLL-R--------------------------SPREVKYFAF-PGELL-LPLIVSSLITG-LA-NIFPAAFRSYSTTPEVEGMNILGLVVFSMVDFFNSLNEATAPLGILFLIAGKI-V- |
3 | 2c1zA | 0.07 | 0.06 | 0.76 | 0.83 | DEthreader | | -----------------------------------FPF--STHAAPLLAVVRRLAAAAPHAVFSFFDISDVYFDELFTRAAPEFRM-LVADLPFWVFIN-SFEELDDSLT-VMVEVLEIGVR-IE-FTKSGLMSCDQILSQEGKKLRENLRALRETADRAVGGSSTEFITLVDLVS |
4 | 5k7vA | 0.05 | 0.05 | 1.00 | 0.66 | CEthreader | | MARAISAIAELAKKAIEAIYRLADNHTTDTFMARAIAAIANLAVTAILAIAALASNHTTEEFKAIEAIYRLADNHTTDKFMAAAIEAIALLATLAILAIALLAEEFMAKAISAIAELAKKAIEAIYRLADNHTSYIEKAIEAIEKIARKAIKAIEMLAKTTEEYKEKAKSAIDEIR |
5 | 6a2jA | 0.09 | 0.09 | 1.00 | 0.72 | EigenThreader | | MNKALKALGVLTTFVMLIVLIGGALVTKASIIEWSHRFASGISIILVLSLAFWSWRKITPIFREFLFLQALLGALAVVFGFGISLISFASVLILTLLIFEADKMQFHMIGILIYSYIVVYTGAYVRHTESSPTQFHEWVQMGHRAAALLLFVWIIVAAVHAITSYLCYFLLLIARF |
6 | 4tquN | 0.14 | 0.11 | 0.76 | 0.20 | HHpred | | ------------------VNAVLLGIFALCALYPIIYIFSMSISSGAA--------VTQGR---VFLL-PVDIDFSAYGRVLHDKLFWTSYANTIFYTVFGVVTSLIFIVPGAYALSKIAFTM---WFNAGDLGL-LDNRFGI----LIGFACNANIILMRNYFESISASF----- |
7 | 5edlA | 0.12 | 0.10 | 0.81 | 0.38 | MRFsearch | | --VISIVFAVVYLLFTHFGNVLAGMFYEPIYGIWFIVSVIAAYALVSEIIAALVECLLGN------------------------PSGPMVIVIGIVQGLGAEAVFLAPVLMLAGMGSSVASFIYDLFVS------GYAAYSPGYLLIMLVIRLISGALLAGLLGKAVSDSLAYT-- |
8 | 3vvnA1 | 0.15 | 0.13 | 0.87 | 0.90 | FFAS-3D | | -VRLSIPMMIGMSVQTLYNLADGISLAAVGLFFPVFMGIIALAAGLGVGTSSAIARRIG------------ARDKEGADNVAVHSLILSLILGVTITITMIEYARVLLAGAFIIVFNNVGNGILRG----------EGDANRAMLAMVLGSGLNIVLDPIFAAYATLLSMVVTSLF |
9 | 3tx3A | 0.09 | 0.09 | 1.00 | 0.99 | SPARKS-K | | YVVVPILTNLILFSLAFTWLYGEVDYIIALFSFIFSTIMHLIAAPFNGLLAEKVERYESGESLGDEGFLGLFKDIPRTLKREMQKLMYYIPRALGFFLLSLVIVIGQVLWYIFVCWMMSIQYLDYPFDNHKLSFELHQQRSKTLGFGFGVTVLLIIMPLAVCGATSLWVDHYRRSA |
10 | 4he8F | 0.10 | 0.09 | 0.92 | 1.05 | CNFpred | | MAGPTPVSALIHAATMVTAGVYLIARSSFLYSVLPDVSYAIAVVGLLTAAYGALSAFGQ-------------TDIKKIVAYSTISQLGYMFLAAGVGAYWVALFHVFTHAFFKALLFLASGSVIHAL-VRKMGGLWKPQTRWHALIGALALGGLPLLSGFWSKDAILAATLTYPFG |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|