Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | VCPQGQALPYSTTNRLGYREYKSNAQICGRCPVRSQCTNSAIAVKVVTRHVWERAKERVDARRLTEWGQRIYARRKQTVERSFADAKQLHGHRYARMRGLRKVAEQCLLAAAAQNIKKI |
1 | 1pc5A | 0.06 | 0.03 | 0.43 | 0.87 | DisCoVER | | VVTCVCPVDCFYEGPNFLVIHPCCALCEPECQAI-FSEMQEFIQLNALAWPN------------------------------------------------------------------- |
2 | 6hxaA | 0.05 | 0.04 | 0.92 | 0.83 | DEthreader | | --LLACGMIF-LNSQ-YAPQVHVVAALSFPNLLFWYWMWSKGDACHWIESLA-AIFDGPQNSPIAIDMELVFRVAQGFIVKVFTNHQ-----LLCYVCLNKINYMQVSDWVSEQFWLNG |
3 | 3ecpA | 0.08 | 0.08 | 1.00 | 0.66 | CEthreader | | LGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEEPDNLERMVSILSFVAVRLLQ |
4 | 3b70A | 0.04 | 0.03 | 0.92 | 0.58 | EigenThreader | | LPRDQVYVRVAVAINFLGTYAGTVVAVGSDVTHI------QVGDRVYAQGAFSAGISTAGLAMKLLGTMQMLRLSPHNFDLAKSRTIRTYTLRYALDCITESTTFCFAAI----GRAGG |
5 | 3ecpA | 0.13 | 0.08 | 0.66 | 0.42 | HHpred | | ---------------------------------EEINPPKGETLLLLTSEPVESLA-------QALRVIDIYTHRWR-IEEFHKAWKTGAGAERQRMEEPDNLERMVSILSFVAVRLQL |
6 | 3ecpA | 0.14 | 0.08 | 0.59 | 0.60 | MRFsearch | | -----------------------------------------LKWLLLTSEPVESLAQAL-------RVIDIYTHRW-RIEEFHKAWKTGAGAERQRMEEPDNLERMVSILSFVVRLLQL |
7 | 4ehtA1 | 0.14 | 0.13 | 0.97 | 0.43 | FFAS-3D | | --PEGQDAKVLKLDNNGRLLNFLMNDKCAEVDVSESISMNSQNEVSISSTCTVFAESEVISHLSEKIEDIVAGIHTSVAKRVSSLVKRIGVQRNVVMVG--GVARNSGIVRAMAREINT |
8 | 5odwC1 | 0.11 | 0.09 | 0.83 | 0.68 | SPARKS-K | | -----MVITHVQGGGRDIIQYIPARSSYGTPPFVPP-GPSP---------YVGTGMQEYRKLRSTKSHSELKKDFPQKSESMYQSQLLASRKFY-----GEFLDRHMSELAKAYSADIY |
9 | 1mm8A | 0.09 | 0.07 | 0.73 | 0.62 | CNFpred | | -----------------LNAVLAEEIN--------PPKGETPLKWLLLTSEPVESLAQAL------RVIDIYTHR-WRIEEFHKAWKTGAGAERQRMEKPDNLERMVSILSFVAVRLLQ |
10 | 6qq5A | 0.11 | 0.10 | 0.91 | 0.83 | DEthreader | | ---EVQAPPIIGQWIGGMIFTAAAGTEREGTSVTNNWPHELIGN-----GYEYVDRWIVHLWVEGF-FEVFATAYFLALGFL--ALSPGLKLFWGLGLFGDVVFLLGALAMVVQVILGL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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