>PF13708 (193 residues) NTVDKGAWEYLMKESGLRSFMDSKARQDWDNQIKEGYLKVPEFNFDNIKATFTTLHEARG EMFERGVIECFKNLSWDYKTNQPCKFGKRIIMYYLFNEKSRNGFCSQYPKYENANKVDDI LRAFHIFDGKPELDHRNSFQQMVTKAREFDTDVTEIENEYVIIKWFNNGNGHINFKRLDL VDKMNAIIAKYYP |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | NTVDKGAWEYLMKESGLRSFMDSKARQDWDNQIKEGYLKVPEFNFDNIKATFTTLHEARGEMFERGVIECFKNLSWDYKTNQPCKFGKRIIMYYLFNEKSRNGFCSQYPKYENANKVDDILRAFHIFDGKPELDHRNSFQQMVTKAREFDTDVTEIENEYVIIKWFNNGNGHINFKRLDLVDKMNAIIAKYYP | |||||||||||||||||||
1 | 5oqlb | 0.05 | 0.04 | 0.77 | 0.65 | DisCoVER | DPRVL--V--T---TSR--DPSSRLMAFSKEIR--LMFPTAIR----L--NR--GNL-ILPDLVMSAQDIILLHEHPTAITISGPTLMASLHNVVLR--ADITVSESY-----P--HL--IFEGFRTPLGQVLKHLFPPRKSGN--R----VITFVNQDDCIEVRHVGPRFTMRPFSI--TM--G-TL--EN- | |||||||||||||
2 | 4wz9A | 0.03 | 0.02 | 0.78 | 0.83 | DEthreader | FNATALEAGVKILKVL--H-------AGAMEVTYREQALLFNP---KADAYPGQEY-WE-LFNQQVIQYAMGQDGQAS------------TRPMNWNAAT-----EISALFDVAYDKSGSVLNMMRHVLGDWKGLAYL-AVDEQLY---------VTVAQIMRTWT--NEAGYWMIPYNFWFNQRVNQLIDDA | |||||||||||||
3 | 5m45A1 | 0.06 | 0.06 | 0.91 | 0.43 | CEthreader | -------------RGIVRGGETLKEHRDRLMAATKATGRYAGLKTLELREREPILYNKLFSRLRAGVVDARETAK-----KIAASPIVEQEGELCFTLYNAAGDSLLTSTGIIIHVGTMGAAIKYMIENNWEANPGVHDKDIFCNNDSLIGNVHPCDIHTIVPIFWEGELIGWVGGVTHVIDTGAVGPGSMAT | |||||||||||||
4 | 2j0oA | 0.05 | 0.05 | 0.85 | 0.68 | EigenThreader | LNDTLHNIRTTNQALKKELSLTKTSLEEIALHSSQISMDVNKSAQLLDILSRHEHAVSSYTQMYQDFSAVLSSLAGWIGNDG-----NSVKLQ-------------------VNSLKKALEELKEKYK--DKANNTVSQEQANKWLTELGGTIGVSQKNGGYVVSINNGEVVLD---NAKNAGFSAEDETMKN | |||||||||||||
5 | 2diwA | 0.10 | 0.08 | 0.76 | 0.27 | HHpred | --------------SSGSSGDNMEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKKHVVQSVEKFIQKCKPEYKVPGLY------VIDSIVRQSRH-QFGQEK-DVFAPRFSNNIISTFQNLYR-CPGDDKSKIVRVL-NLWQKNN----------------------VF-KSEIIQPLLDMAAGSGP | |||||||||||||
6 | 2j0oA | 0.11 | 0.09 | 0.83 | 0.55 | MRFsearch | ---QKTLTKTSLEEIALHSSMDVNKSAQLLDILSRHEYPIQMISHRELWAKIANSINDINEQYLKVYEHAVSSYTQMYQDFPGGNDGNSVKLQ-------------------VNSLKKALEELKEKYKDKPPANNTVSQEQANKWLTELGGTIGKVSQK--------NGGYVVSINMTPIDNMLKSLDNL--- | |||||||||||||
7 | 2vj5A2 | 0.08 | 0.06 | 0.73 | 0.62 | FFAS-3D | ----TDQYIEWLGNFGFNHR--HTIVNFVEQSLIVDDSEKPSCNAYEFGFVLSKLIAKMIRTSDVIFMKKLESSS-----------------------------LLKDGSLSAEQLLLTLLYIFQVIEVSRASHEDSVVYQTYLSSVNE-----------SPHDIFKSES-----EREIAINILRELVTSAY- | |||||||||||||
8 | 5cwjA | 0.08 | 0.06 | 0.69 | 0.62 | SPARKS-K | --DSEEEQERIRRILKARKSGTEESLRQAIEDVAQLKSQDSEVLEEAIRVILRIAKESGSEEALRQAIRAVAEIAKEA---------------------------------QDSEVLEEAIRVILRIAKESGSEALRQAIRAVAEIAKEAQ-------------------------DPRVLEEAIRVIRQIAE | |||||||||||||
9 | 4wd9A | 0.07 | 0.05 | 0.74 | 0.63 | CNFpred | ------VYQIISEFCE----------------------------YQKYEDICETVTLCYGDEYRELSEQYLGSLI-----------VNHYLISNLQKDLSWNTFLTKVEAIDYIIPLKKVQKFIQEYSEIEIGEGIEKLKEIYQEMSQI-----LENDNYIQIDLISDSEINFDVKQKQQLEHLAEFLGNTTK | |||||||||||||
10 | 6ekkA | 0.08 | 0.06 | 0.77 | 0.83 | DEthreader | -YVRQFP-GFCILSYLPW--FE--VFYKLLNILADYQQWLLETLHKLPIPDPGTVPDTRELPSINNLTEYFVAV-----------DVNNM-----------------ICS-K-LSTLTACIHGSAAMLYYWQVYIVLIGIHLMEKVRNMAL--DDVV----ILNV---DTNTLETDLLVISLKRLKSTTTGDG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |