>PF13651 (355 residues) TLNAAKSAKKDEFYTQMADIERELQHYWQHFRGKVVLCNCDDPYESNFFKYFALRFNQLG LKKLICTCYNGSPVAGTQLSLFGLDTEGNEKKIAYKVEISEVKDVNGDGAVDLADVEYLI QNDKNVLSELKGNGDFRSKECIELLKQADIVVTNPPFSLFREYVAQLMEYGKKFLIIGNV NALTYRDIFPLIKENKMWIGPSITSGDRKFNVPDDYPLNAATCGIDDDGRKYIRVKGVRW FTNMDHNKRHEELDLVCRYSPEEYPQYDNYDAINVDRTSDIPCNYDGIMGVPITFLDKYC PEQFEIVNANDYSKKYANINIKDVVSKEVELLSPGADGWHINGKKKYARIFIRNK |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | TLNAAKSAKKDEFYTQMADIERELQHYWQHFRGKVVLCNCDDPYESNFFKYFALRFNQLGLKKLICTCYNGSPVAGTQLSLFGLDTEGNEKKIAYKVEISEVKDVNGDGAVDLADVEYLIQNDKNVLSELKGNGDFRSKECIELLKQADIVVTNPPFSLFREYVAQLMEYGKKFLIIGNVNALTYRDIFPLIKENKMWIGPSITSGDRKFNVPDDYPLNAATCGIDDDGRKYIRVKGVRWFTNMDHNKRHEELDLVCRYSPEEYPQYDNYDAINVDRTSDIPCNYDGIMGVPITFLDKYCPEQFEIVNANDYSKKYANINIKDVVSKEVELLSPGADGWHINGKKKYARIFIRNK | |||||||||||||||||||
1 | 2np6A1 | 0.11 | 0.05 | 0.47 | 0.78 | DisCoVER | ----------RVTPVVDFMVS-LA--E---A-PRGGRVLEPACAHGPFLRAFREA---GTA--YRFVGVEIDPA-----LDLP---------PWAEGI----------------------------------LADFLLWEP--EA---FDLILGNPPYFLEKAVRLL----KGGVLVFVVPLLRE-FLA------REGKTSVY---YLGEVFPQ-K---------------KVSA-VVIRFQKS-G-------------------------K------------------------------------GLSLWDTQES----------GFTPILWAEYPHW-----EGEI----- | |||||||||||||
2 | 5hr4C | 0.08 | 0.06 | 0.68 | 0.83 | DEthreader | ----KKRRNLGAHYTSEANILKLIKPLLDELEKLLTFFDPACGCG-NFLVITYRELRLLEQINQFFGIEIEEFP--AQIAQV--------------LWLTDHQMNMKIS--------AR-IPLKSTPHIL-NANALIDWNDVLEAKKCCFILGNPPVAWYPKAAHYIQTNAIRCAFVSTNSITQSLLWPLLLSLGIKINFAHR---TFSWT-------------NEA-SGVAAVH--CVIIGFGSKIKAKRDGVI--ISKLPSMRY------ETWMRNVGVYNTFPW----------IA-IAFFETYQ-------------------------------------------MTS- | |||||||||||||
3 | 2b78A2 | 0.12 | 0.06 | 0.50 | 0.59 | CEthreader | -----------GIFLDQRQVRNELINGS--AAGKTVLNLFSYTA------AFSVAAAMGGAMATTSVDLAKRSRA------------------------------------LSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSKDYHKLIRQGLEILSLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDLQQ-----------LPSDFAVNVQDESSNYLKVFTIKV---------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 4rbnA | 0.06 | 0.06 | 0.92 | 0.63 | EigenThreader | VAETMNMLMDILEAPSPSALEEFLACIP---MISRILSPHGYFGQDNQVRALEKEMHDRLEPKILIVTRLIPDAGDTTCNQRSGCTN--------TWILRVPFRKHNGEIIPH---------WISRFEIWPHLEIFAGDVEREALAELDLIIGN-YSDGNLVATLLSRRLGVTQCNIAHALEKTKYTADLLAMNSADVTSTYQEIAGTRE--AEGQYESYQAFSMP--DLYRVIHGKFNIVSPGANADIYFPYSDPNRRLDDATNLPYLQDPDIFTMA---RLDRIKNITGLVELYAASPRLRSLLVIVGGKIDPQHSSDQEQIHRMHQLMDEHELDQQVRW--LGGIFVQPFAT | |||||||||||||
5 | 6ucaA1 | 0.21 | 0.13 | 0.63 | 0.62 | HHpred | -------QWEDEKLSGAAAREAHNERYLKLPLTQRKFCTCQQLFADRSCQFLVDLLSALGFRRVLCVGT---------PRLHELIKLTDKKSNIKSLLLDI------DFRY-----SQ-FYMEDSFCHYNMFNHHFFDGTCRAFLQEGIIMVTDPPFGGLVEPLAITFKGQSQ----DSHKELPIFWIFPYFFESRICQFFPSF-QMLDYQV--DYDNHAL-YKHGKTG---RKQSPVRIFTNIPPNKII--LP--TE---EGYRFCS--------------------------------------------------------------------------------------- | |||||||||||||
6 | 3cx3A | 0.14 | 0.05 | 0.35 | 0.35 | MRFsearch | --KETYQKNAQAFIKKAQELTKKFQPKFEKATQKTFVTQ------HTAFSYLAKRF---------------------------------------GLNQLGIAGISPEQEPSPRQLTEI----------------------QEFVKTYKTIFTES--NASSKVAETLVKSTVGLKTLNPQNDKTYLENSILAEE----------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 3ufbA2 | 0.17 | 0.08 | 0.44 | 0.50 | FFAS-3D | ------------FYTP-RPVVRFMVEVMDPQLGESVL----DPATGGFLVEAFEHLE----------------------------RQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEKGILGNFPEDMQT----AETAMLFLQLIMRKLKRP----GHGSDNGGR--------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 2hy7A | 0.11 | 0.09 | 0.82 | 0.62 | SPARKS-K | ------------------------------RRPCYLVLSSHDFRTRANIHFITDQLALRGTTRFFSLRYSRLMKGDMRLPLDDTANTVVSHNGVDCYLWRTTVHPFNTRRVEDAMFRWYAAH--------------PPKQLLDWMRESDVIVFESG--IAVAFIELAKRVAAKLVYRASVASYIEREFDRVAPTLDVIALVSPVSRDNVFHVGDHNLDQLGDPSPYAEGIHAVAVGSFHVIGSGRHPGYGDNVIVYGEMKHAQTIGIKHARFGIA------PYASEQVFGLP-------------AVCPNAVVGPYKTPGNADSVIAAITQALEAPRVRYRQCLNWSDTTDRVLD | |||||||||||||
9 | 4jb0A | 0.10 | 0.05 | 0.50 | 0.94 | CNFpred | -----------------TAATTNARRFVTESKADVIMGSS----VTPPTVAVSNVANEAQVPHIALAPLPITPERKWSVAMPQPIPIMGKV-NIKTVGYIGYSDSYGD--LWFNDLKKQGELKIVAEERFARPDTSVAGQVLKLVANPDAILVGASGTAAALPQTSLRERGYKGLIYQTHG-AASMDFIRIAGEGVLMASGP--------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 5hr4C | 0.11 | 0.08 | 0.70 | 0.83 | DEthreader | -----KKRRNGAHYTSEANILKLIKPLLELKLGLTFFDPACG--CGNFLVITYRELRLLEINQFFGIEIEEFPA----QIA-------------QVALW-TDHMNMKIS--------ARIPLKSTPHI-L--NANALQIDWNDVLEACCFILGNPPFVLVAAWYPKAAHYQIRCAFVSTNSITQQSLLWPLLLSGIKINFAHR--TFSWTNEASG---------------VAA-V-HCVIIGFGDSDEKII-E---------------------------------------INPYLRDG---VDVIACK-R--QQPI---PSMRYGNKPTG-AP-Y-NTYHIYSASLVTFFEQK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |