>PF13608 (446 residues) LLIRSTFDHVLLERALETDPYYILYSALSPTVLKQMYTSKSYANALRVFVRSNQSLFQVV CTLENLARRMTRAQSIEQQIMQLQSLYPQLLDMLADNIPDSPLSWLSHHVTTDSMQRAIE LNNCDIELARGGYASINTSWRKKKEQYYADLIKEYYNALSPQAKIFVSRAYIGYLHATTP LFANARKISSEIASNICTQAYSRTIGRGISIVSSGGRKGKTWLTARGDSFYKTMISRAIK LYTPEVSAVIGVATVVGILLSTMTTLHTYLVKNKQTAQKTNEKFEELMYDKVALYIPKYD AEHSHLQGKDLDFEHFARWLMARDKKLSSFVQSHLVDTVTHQAKDDTNVWIEKCIATIVL MMMAIDSNKSDKLYQILCKLRTVFSTMGQTVVTHQSIDEILDIDESKRTTIDFERVEVMQ PTQPILKTTFEGFWDMQIQMGRTVAH |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LLIRSTFDHVLLERALETDPYYILYSALSPTVLKQMYTSKSYANALRVFVRSNQSLFQVVCTLENLARRMTRAQSIEQQIMQLQSLYPQLLDMLADNIPDSPLSWLSHHVTTDSMQRAIELNNCDIELARGGYASINTSWRKKKEQYYADLIKEYYNALSPQAKIFVSRAYIGYLHATTPLFANARKISSEIASNICTQAYSRTIGRGISIVSSGGRKGKTWLTARGDSFYKTMISRAIKLYTPEVSAVIGVATVVGILLSTMTTLHTYLVKNKQTAQKTNEKFEELMYDKVALYIPKYDAEHSHLQGKDLDFEHFARWLMARDKKLSSFVQSHLVDTVTHQAKDDTNVWIEKCIATIVLMMMAIDSNKSDKLYQILCKLRTVFSTMGQTVVTHQSIDEILDIDESKRTTIDFERVEVMQPTQPILKTTFEGFWDMQIQMGRTVAH | |||||||||||||||||||
1 | 6g70A | 0.09 | 0.08 | 0.94 | 1.21 | FFAS-3D | ---------EKFWKTVEMNPQDFTGWV---YLLQYVEQENHLMAARKAFFVHYPYCYGYWKKYADLEKRHQSDEVYRRGLQAIPLSVDHYINFLKETLDPGDQ--ETNTTIRGTFEHAVLAAGTDDKLWEM-YINWENEQLREVTAVYDRILSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNTDPAKLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGAQLKNWKEYLEFEIENGHERVVVLFERCVISEFWIKYAKYMENHSIEGVRHVFSRACTVHLPKKPMAHMLWAAFEEQQGNINEARIILRTFEECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAIYAIKLARHLFNLPKSRKVLLLYLNLLEMEYSCDLKNCFDKAIHGSLPIKMRITFSVEFLEDFGSD------VNKLLNAYDEHQTL------ | |||||||||||||
2 | 5vchA | 0.09 | 0.07 | 0.79 | 1.10 | CNFpred | ----------NLLQAACRETAIFIILSLLESFNANLALIDDFLNLFAQTINDSASLETRSLSAQALSYVSSLIEINPQYAAKFASLIPSVVQVLDATIR--EGDTTNTKLIFNCLNDFLIADLVKLALQIAVNSDVDEDIRVFAVQFVTSALVYRKSKILGPEITLAALKVASEEIDVEDELTNE------TPALTALRLISNASGELSPQVGVPIIEHLPTMILLAISVLVTGSPDYTLSQFDKIIPATVTGAALKCIVQLSTNLQDEVARHEQYLPLVIDIIDSAKHVVIYKYATLALDGLLEFI----AHNDIIKYLDPLMNKLFQMLETQQ-----------SPKLRAAIVSAIGSCAFAAGSGFVPYFKTSVQYLQQFIQ------------------------------------------------------------- | |||||||||||||
3 | 3dm5A | 0.05 | 0.03 | 0.54 | 0.68 | DisCoVER | MVLDNLGK-RALIQAD---VNFLGKPIKPTIL-LM-VGIQGS-------------GKTTTVAKLARYFQY-KV--GV--V--CS--DTWRPGAYHQLRQLLDRYHIEVFGNP-QEKDAIKLAKGVDYFKSKGV----------DII-IV--D------------------TA-GRHKEIEEMKQISNVIH-PHE-VIL-VI--D---GT------------------------------IGQQAYNQALAFKIGSII-VT--K---------------------------------------------------------------------------LDGSA----------KGGGALSAVA--A--TG--A--PI---KFIGTGEKIDDIEPFLLGIERFL------RGKFTLKKVIMDSMELLNPNYSRIKRIARGSKFKSM- | |||||||||||||
4 | 3og2A | 0.04 | 0.02 | 0.69 | 0.67 | DEthreader | -----RLPVPSLY--L--DVFHKIKALGF--VSF-VD-ALLEADGIFSLEPFFEAATGIYLLARPGYINAEVSGGGFPLRTNYVAHIASIIAKAQ-------------ITNGGPVILY--QPENEYSGAPNDAFHDGYPLGFDC-AH--------------------------PSAWPDNG-GAFDPFGGGFCSLVNHEFERVFYK----------------------------VTIFNIYMTFGYDYGASIKYLKLQGQFLKVSPGYITAAKESG------TSAGD-LTIPQLGGSLTL-----------GAQELHE--SNVTIHVVLQWT--A--SSARQVVQSLVI-------WVPT---------------KQSAYGSSNPDSVIINGGLIRSVQADFNVTTPLEIIGIPKISKLANGKELPAQEYLTGRER---------- | |||||||||||||
5 | 6f1te | 0.07 | 0.07 | 0.99 | 0.72 | CEthreader | GLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALV--AIFTHLRKIRNTKYPIQRALRLVEAISRDLSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFQTWDDEYEKLQVLLRDIVKRKREENLKMVWRINPAHRKLQARLDQMRKFRRQHEQLRAVIVRVANAIEEVNLAYENVKEVDGLDVSKEGTEAWEAAMKRYDERIDRVETRITARLRDQLGTAKNANEMFRIFSRFNALFVR--PHIRGAIREYQTQLIQRVKDDIESLHDKFKVQKRVEDVLGKGWENHVEGQKLKQDGDSFRMKLNTQEIFDDWARKVQQRNLGVSRVRGRTGNVLKLKVNFLPEIITLSKEVRNLKWLGFRVPLAIVNKAHQANQLYPFAISLIESVRTYERTCEKVEERNTISLLVAGLKKEVAEGIALVWESYKLDPYVQRLAETVFNFQE | |||||||||||||
6 | 3a6pA | 0.05 | 0.05 | 0.99 | 0.85 | EigenThreader | FSFLLNTLQENVNKYQQVKTANCRVGVAALNTLAGHITAEKLLEILCLLLNEQELQLGAAECLLIAVSRNFGKYLESFLAFTTFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVRLACRLDPKTSFQMAGEWLKYQLSQWEAMTLFLESVITQMFRTLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFAVRNVRRHACSSIIKMCRDYMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHRVLSDRMSFCVYSILGVVKRTEQILKLLDNLLALIRTHNTLYNCFHILGKAGPSMQQDFYKPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQLVRMLTREVMDLITVCCVSELTTAFNSLAWKDTLSCQRTTSQL----CWPLLKQVLSGTLLADAVTWLFTSVLKGLQM | |||||||||||||
7 | 6gmhQ | 0.11 | 0.07 | 0.67 | 0.39 | HHpred | -------ASDWFKEALQINQDHPAWSLIG---NLHL-AKQEWGPGQKKFLKQQSDTYSMLALGNWLLHQPTRDRE-KEKRH-QD-RALAIYKQVLRN--D-AKNLYAFREARDVFAQVREATADIDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQEVVLYLARALFKCGKLQECKQTLLKARHSDTVLMFNVALVLQRLATSVLK-DE----------------KSNLKEVLNAVKEL-ELAHRYFSYLSKLALAATEARQCSDLLSQAQYHVARADEEERELRAKQEQEKELL----RQKLLKE---QEEKRLREKEEQKKLLEQ----------------RAQYVEKTKNIL---------------------------------------------------------------------------------------- | |||||||||||||
8 | 6f1te | 0.10 | 0.09 | 0.84 | 0.65 | MRFsearch | ---QALETVNDYNPLMKDFPLNDLLSATELDKIRQALV--AIFTHLRKIRNTKYPIQRALRLVEAISRDLKVMVACFEVFQTWDDEYEKLQVLLRDIVKRVWRINPAHRKLQARLDQMRKFRRQHEQLRAVGTEAWEAARIDRVETRITARLRDQLGTAKNANEMFRIFSRFNALPHIRGAIREY--------QTQLIQRVKDDIESLHDKFKVQPPVSGSIIWAKQIDRQLTAYMKRVEDVLVEGQKLKQDGDSFRMKLNTQEIFDDWARKVQQIVNKAHQANQLYPFAISLIESVRTYERTCEKVEERYKLDPYVQRLAETVFNFQEKVDDLLI----------IEEKIDLEVRSLETCMY-----DHKTFSEILNRVQKAVDDLN-------------------------------------NLPIWVNKLDMEIERI----- | |||||||||||||
9 | 5h11A | 0.07 | 0.06 | 0.91 | 1.20 | FFAS-3D | ----GPLGSQLIQEFQRRGEIGRMREV-----AAVLLHFKGYAHCVDVYIKQCEDIAILCQRVNKQVGEVTVMAKLIQSINKIQAHVKERLDETRNSD--------VEQYLKNLYDLYTRTTALAAKLTD---YNLGSDKHTFLSKLIKNIFSCYLESYIDMERQYLQNRSGMILQRYYDSKNHQKRIDTHGETLLSQEVVVNLLQETRHAFERCNKDLPKNAFSIFLILVEYLCVDHIDYALEIGLYFLDVVQQANTIFHLFDKQFNDLTECLHKKKEVIEQMEVKLDTGIDRTLNCMIGQMKYILTTEQKKTDFTTACSKVCAYVGKQVERVRRSM----DGKNVDTVLTELVRFHRLIHEHLSSMGGMLAICDVAEYRRSAKDFR--------VPLVLQLFDTLHALCNLLVVAPDNLKQVCSGEQLTNLDRNLLHA------ | |||||||||||||
10 | 6r9tA | 0.08 | 0.08 | 0.98 | 0.83 | SPARKS-K | SQEDRAQVVSNLKGISMSSSKLLLAAKALPNLKSQLAAAAAVTDSINQLITMCTECDNALRELETVRELLGCLDSVMENSKVLGEAMTGISQNAKNGNL--PEFGDAISTASKALCGFTEAAAQAAYLVGVSDPNVEPTQFARANQAIQMACQSLGEPCTQAQVLSAATIVAKHTSALCNSCRLASARTTNPTAKRQFVQSAKEVANSTANLVKTIKALDGA-FTEENRAQCRAATAPLLEAVDNLSAFASMEPIVISAKTMLESAGGLIQTARALAVPPSWSVLAGHSRTVSDSIKKLITSMRD--KAPGQCETAIAALNSCLRDLDQASLAAVSEGISQEALHTQMLTAVQEISHLIEPLANAARAEASQLGHKVSQMAQYFEPLTLAAVGAASK--TLSHPQQMALLAESALEAGGNPKQAAHEDLTTTLNEAASAAGVVGGM | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |