>PF13553 (248 residues) KVDTEGVYECTETGLIFEVNRKVDIKYCVLSWSKYADLVVKPWAVGGPMFDVKCDPACLT SIQFPHSLCLGHHDANMTFRVLHVKNSEASLECIVDHSATHVKWHVSSLSPVGPVIQSEE TLYHHGAVILYKVIDQNPSLSFRVYVATNNESYIKDIAKAVKHSSKKFMKIDKPPVCLKL LEHGKKYRLVSEPEADITPEEIEFVDGSLLKLKSYIEVYLEQPMEFKLLLVEMDSDEIVW KAKLRECD |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | KVDTEGVYECTETGLIFEVNRKVDIKYCVLSWSKYADLVVKPWAVGGPMFDVKCDPACLTSIQFPHSLCLGHHDANMTFRVLHVKNSEASLECIVDHSATHVKWHVSSLSPVGPVIQSEETLYHHGAVILYKVIDQNPSLSFRVYVATNNESYIKDIAKAVKHSSKKFMKIDKPPVCLKLLEHGKKYRLVSEPEADITPEEIEFVDGSLLKLKSYIEVYLEQPMEFKLLLVEMDSDEIVWKAKLRECD | |||||||||||||||||||
1 | 4d8oA | 0.08 | 0.08 | 0.95 | 1.00 | DEthreader | SFMVGGAMRGCRHNLRIIIPCPTRVTCRVRHRLATM-PPMVEGEGLSRLIEVSGAQFLPVIVEIP-HFAALR-GKERELVVLRSENSWKEHFCDSPLEKRICRIITRDFPYFAVVSRIQICVPYMAKFVVFAKSHDPIEARLRCFCMTDDKVDKTLE--QQ--E-N-FAEVARSRDV-EVLEGKPIYVDCFGNLVPLTQHHIFSFFAFK--ENRLPLFVKVRTQPCGRLSFMKEPHQAICNLNITLPI | |||||||||||||
2 | 4d8oA | 0.09 | 0.08 | 0.93 | 1.17 | DEthreader | SFMVGAMRGCRHNGLRIIIPPPTRVTCRLVRRLATMPPMVEGEGLASRLIEVSAQFLGPVIVEIPH-FAA-LRGKERELVVLRSENWKEHFCDSPLEKKRICRIITRDFPYFAVVSRIICVPYMAKFVVFAKSHD-P-IEARLRCFCMDKDKTLEQQ-ENF-------AEVARSRDVEVL-EGKPIYVDCFG--NLVPLTHHIFSFF-AFKENRLPLFVKVTQEPCGRLSFMKEPHQAICNLNITLP- | |||||||||||||
3 | 3g5bA1 | 0.11 | 0.11 | 0.98 | 1.29 | DisCoVER | FGCLGGRLTIPGTGVSLLVPNGAILYLRINKTESTLPLSEGSQTVLSPSVTCGPLLCRPVVLTVPHCAEVIAG-D-WIFQLKTQAQGHWEEVTLCQLEAKSCHILLDQLGTYVFTGESYSSAVKRLQLAIFAPALCSLEYSLRVYCLEDTPAALKEVLELERT--LGGYLVEEPKPLLFKDSYHNLRLSLIPWRSKLKYQEIPFYVWNGSQKALHCTFTLERHEFTCKVCVRQVEGEGQIFQLHTTL- | |||||||||||||
4 | 3g5bA1 | 0.12 | 0.10 | 0.87 | 1.20 | MRFsearch | -----GRLTIPGTGVSLLVPKFYDLYLRINKTESTLPLSEGSQTVLSP--SVTCGPTGLVVLTVPHCAEVI----AGDWIFQLKTQHWEEVVTLCQLEAKSCHILLDQLGTYVFTGESYSSAVKRLQLAIFAPALTSLEYSLRVYCLEDTPAALKEVLELERTL--GGYLVEE----------PKPLLFKDS------YHNLRLSLHDISQKALHCTFTLEREFTCKVCVRQVEGEGQIFQLHTT--- | |||||||||||||
5 | 3g5bA1 | 0.13 | 0.12 | 0.97 | 1.29 | SPARKS-K | FGCLGGRLTIPGTGVSLLVGKFYDLYLRINKTESTLPLSEGSQTVLSPS--VTCLCRPV-VLTVPHCA--EVIAGDWIFQLKTQAHQGVVTLPCYQLEAKSCHILLDQLGTYVFTGESYSSAVKRLQLAIFAPALTSLEYSLRVYCLEDTPAALKEVLELERTLG--GYLVEEPKPLLFKDSYHNRLSLHPHAHWRSKLQEIPFWNGSQKALHCTFTLERHSLATCKVCVRQVEGEGQIFQLHTTLTT | |||||||||||||
6 | 3g5bA | 0.12 | 0.12 | 0.97 | 1.55 | MAPalign | TFGCGGRLTIPGTGVSLLVPAIPDLYLRINKTESTLPLSEGSQTVLSPSVTCGPLLCRPVVLTVPHCAEVIAG--DWIFQLKTQAQGHWEEVTLCQLEAKSCHILLDQLGTYVFTGESYSRSAVRLQLAIFAPACTSLEYSLRVYCLEDTPAALKEVLELER--TLGGYLVEEPKPLLFKDYHNLRLSLHIPAHWRSKLKYQEIPFYHVWNGALHCTFTLERSTEFTCKVCVRQEGQIFQL-HTTL-- | |||||||||||||
7 | 3g5bA1 | 0.11 | 0.11 | 0.99 | 1.75 | CEthreader | FGCLGGRLTIPGTGVSLLVPNFYDLYLRINKTESTLPLSEGSQTVLSPSVTCGLLLCRPVVLTVPHCAEVIAGDWIFQLKTQAHQGHWEEVVTLCQLEAKSCHILLDQLGTYVFTGESYSRSAVKRLQLAIFAPATSLEYSLRVYCLEDTPAALKEVLELERTLGGYLVE---EPKPLLFKDSYHNLRLSLHDKLLAKYQEIPFYHVWNGSQKALHCTFTLERHSCKVCVRQVEGEGQIFQLHTTLTT | |||||||||||||
8 | 3g5bA | 0.10 | 0.09 | 0.96 | 1.00 | DEthreader | SGTFGGRLTIPGTGVSLLVPIFYDLYLRNSTLP-LS--EG-SQTVLSPSVTCTGLLLCRPVVLTVPH-CAEVIAGDWIFQLKTQA-EEVVTLDYCQLEAKSCHILLDQLGTYVFTGESYSRAVKRLQLAIFAPALCTSLYSLRVYCLEDTPAALKEVLELERTL-GGYLVEEPKPLL-FKDSYHNLRLSLHDIHWRSLAYQEIPHVNGSQKALHCTFTLERHSEFTCKVCVRQVE-GEGQIFQLHTTL | |||||||||||||
9 | 3g5bA | 0.12 | 0.10 | 0.89 | 1.15 | MRFsearch | ----GGRLTIPGTGVSLLVPKFYDLYLRINKTESTLPLSEGSQTVLSP--SVTCGPTRPVVLTVPHCAEV--IAGDWIFQLKTQAHHWEEVVTYCQLEAKSCHILLDQLGTYVFTGESYSSAVKRLQLAIFAPALTSLEYSLRVYCLEDTPAALKEVLELERTL--GGYLVEE----------PKPLLFKDS------YHNLRLSLHDISQKALHCTFTLEREFTCKVCVRQVEGEGQIFQLHTTL-- | |||||||||||||
10 | 3g5bA | 0.13 | 0.13 | 0.98 | 1.12 | SPARKS-K | FGCLGGRLTIPGTGVSLLVGKFYDLYLRINKTESTLPLSEGSQTVLSPS--VTCPTGLLCRLTVPHCA--EVIAGDWIFQLKTQAHQGHEVVTLDELEAKSCHILLDQLGTYVFTGESYSSAVKRLQLAIFAPALTSLEYSLRVYCLEDTPAALKEVLELERTLG--GYLVEEPKPLLFKDSYHNRLSLHPHAHWRSKLQEIPFWNGSQKALHCTFTLERHSLATCKVCVRQVEGEGQIFQLHTTLTT | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |