Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | ALVNELVSLEWEAFDKVDNEGGRADCQDDWNTFSIMRKSQYYTWTDDMLKSYIGDFHRANDRGWNLITEKYGRMMESTAPLRYAQIRESLPKLPDVKKEIIEEIVKIQVGWMEEFAARYPKAAQNARSIHTAEDTPFNTSYETYLRGEISTYSDETLDLYGRFIARLCREDENLAKMIMTNTALLYGYGSLDELEE |
1 | 5cwcA | 0.06 | 0.05 | 0.86 | 0.65 | DisCoVER | | -EKEELRERLVKICVENAKRKDDTEEAREA--AREAFELVREAAGIDSSEVLELAI-------RLIKECVEN-AQREYD--ISEACRAAAFKRVAEAAKRAGITSSEVLELAIRL-------IKECVENAQREGYDISEACRAAAE-AFKRVAEAAKRAGITSSETLK----RAIEEIRVEEAQREGNDISEAC-- |
2 | 3u4gA | 0.10 | 0.08 | 0.77 | 0.83 | DEthreader | | -----L--LG--NTEISTIPGISVGATLIITIPVPTPAIITKAARNFPIL-VVRGGHISNVLEVIEST-PGGTTTQPQKEKVIKGFAEFGIAVSALS-FIATTRVVVA-ELD--FS-KS-KFKGLRDYER-------GYV-K-EG--VG------AG-GATWLAVKA-GYSEDVSKKVEELYERLGL--------- |
3 | 5cwcA | 0.11 | 0.10 | 0.94 | 0.62 | CEthreader | | ELRERLVKICVENAKR-KGDDTEEAREAAREAFELVREAAERAGLELAIRLIKECVENAQREGYDISEACRAAAEAFKRVAEAAKRAGITSSVLELAIRLIKECVENAQREGYDISEACRAAAEAFKRVAEAAKRAGITS---------SETLKRAIEEIRKRVEEAQREGNDISEACRQAAEEFRKKAEELKRR- |
4 | 3ipiA | 0.06 | 0.05 | 0.86 | 0.75 | EigenThreader | | EW--EEYRYVEAGIKESITLIEDPGLKKVEHVCHRPIILLL------VSEICSGSY-------SRSLNAALAVEALLCGDYLIAKSIAFISPYGEKVIQDFGKAG---DAEGEVLDLKENDYFKCIYKKT-------ASLFAISASIGAYTGGAELAERFSHFGNALGT---AYQIVDDILEFLEVVEGETLPHIY |
5 | 1vt4I3 | 0.14 | 0.09 | 0.65 | 0.49 | HHpred | | ----------------------------------------------ALHRSIVDHYN---------------------IPKTFDS-DDLIPPYLDYFSHIGHHLKNIEPERMTLFRMVFLDFRFLEQKIRHSGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDAIFEE |
6 | 3tj1A | 0.14 | 0.12 | 0.83 | 0.40 | MRFsearch | | --YSRFVKSALDDLDK-----------NDSTQIGIIANQVALPINDKNLNILLDILSSNINRIPPHTLSKYIYFICSSIPKWWQDVSMILVSLPIKQTVCHHDMLKYFLRIDTYLAKFFPNKND------------TRRKLVNYTSNLLKLRGDSILTLVSTHVEEQVTPESGEGVGVFNTLTTLFK--------- |
7 | 1cunA | 0.12 | 0.11 | 0.93 | 0.75 | FFAS-3D | | -MVHQFMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKR--LEAELAAHEPAIQSVLDTGKKLSKEEIQQRLAQF-VDHWKELKQLA----AARGQRLEESLEYQ-QFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAF--ETDFTVHKDRVNDVCANGEDLLKGKVSDLEKAAAQAKLDEN-- |
8 | 5cwcA | 0.13 | 0.11 | 0.84 | 0.82 | SPARKS-K | | ELRERLVKICVENAKRKGDD------TEEREAFELVREAAERAIDELAIRLIKECVENAQREGYDI--SEACRAAAEAFKRVAEAAKRAGITSSEVLELAIRLIKECVENAQREAAEAFKRVAEAAAGITSS------------------ETLKRAIEEIRKRVEEAQREGNDI-----SEACRQAAEEFRKKAEE |
9 | 5iwwD | 0.12 | 0.11 | 0.91 | 0.69 | CNFpred | | TLIDGLLDEALKLFEEMVEK----GIKPDEFTFSSVLKACARLGALELGKQIHGYVIKSGFEGNVVVYNALIDMYSKCLLEEARKVFDEMPEK---DVVTYNTLIDGLCKKLDEALKLFEEMVEKGIKP--------EFTFSSVLKACARL---GALELGKQIHGYVIKSGFESNVVVYNALIDMYSCGLLEEARK |
10 | 3u4gA | 0.08 | 0.06 | 0.77 | 0.83 | DEthreader | | -----LL-VL--GNTEISTIPGTPELTKIIDTIPVPTAIITKARNFP-IL-VVRGGHISNVEVIESTPGGTTTAQAEPQKEKVIKGAEFGIAVSALS-FIATTRVVVA-ELD--FS-KSKFKLRDYERG---------YVK--EG--VG------AG-GATWLAVKA-GYSEDVSKKVEELYERLGL--------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|