>PF13440 (292 residues) ILARLLSPSDYGIIAMVTIFFAVAQSFVDSGFSNALVRKTDRVEEDLSTCFYFNIGVGII AYIVLFLIAPLVANFYNQPILSPIIRITGLGVILNSLCVVQQALFTIKIDFKSQAKITLS ATVISGIVGILLAYQGYGIWALVWQGVASSIVRMGLLWLMSKWRPRTGFSKSSFNYLFGY GSKLLASGLLDTIYNNIYPIVIGKFYNPAQLGNYSRALGWAQLPSANITSILQRVTFPVL SAIQDDSLRLQNSYRRLLKLSAFIVFPLMMGLASMASPLIRVILTAKWDGCV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | ILARLLSPSDYGIIAMVTIFFAVAQSFVDSGFSNALVRKTDRVEEDLSTCFYFNIGVGIIAYIVLFLIAPLVANFYNQPILSPIIRITGLGVILNSLCVVQQALFTIKIDFKSQAKITLSATVISGIVGILLAYQGYGIWALVWQGVASSIVRMGLLWLMSKWRPRTGFSKSSFNYLFGYGSKLLASGLLDTIYNNIYPIVIGKFYNPAQLGNYSRALGWAQLPSANITSILQRVTFPVLSAIQDDSLRLQNSYRRLLKLSAFIVFPLMMGLASMASPLIRVILTAKWDGCV | |||||||||||||||||||
1 | 4lz6A | 0.08 | 0.08 | 0.97 | 1.33 | DEthreader | IFISYVGIEGVAGVTIAFPIMMIMMS-MAGALGIGGASVIREANQVFGNILTVILVLSVIGFISAFTLLGPALQLASQGYATDYLFPILLGSIFFFFAFAANNIIRSEGNATFAMVTMIVPAVLNILLDVLFIFGNMGVLGASIATVIAQASVTGLVLRYFLLHWSLRMKGSVIKEVCLVGLPAFVQQSSASLMMIAINSMLLRFGSDFYVGVFGLVQRIMMFVM-MPMMGIMQAMQPIVGYNYGYLRETVMLGFKVATIFSIGIFALLMLFPEALLRVFT----A---VIG | |||||||||||||
2 | 6cc4A | 0.16 | 0.16 | 0.99 | 2.03 | HHpred | IVARIFGAMATDAFFVAFKLPNLLRRFAEGAFSQAFVPSKQGEDVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTDTADTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFAPTLLNISMIGFALFAAPFNPPVLALAWAVTVGGVLQLVYQLPHILVLPRINFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFAS-FLASGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSSGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQYKFTAF- | |||||||||||||
3 | 6cc4A | 0.14 | 0.14 | 0.99 | 0.78 | DisCoVER | IVARIFGAMATDAFFVAFLPNLLRRIFAEGAFSQAFVILAYKTRVFVSYVSGLLTLALAVVTVAGMLAAPWVIMGFAFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFAPTLLNISMIGFALFAAPFNPPVLALAWAVTVGGVLQLVYQLPHLGMLVLPRIFHDGAMRVVKQMGPAILGVSVSQISLIINTIFASFLA-SGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSFGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVLFKFFDALMT- | |||||||||||||
4 | 6cc4A | 0.16 | 0.16 | 1.00 | 0.45 | MRFsearch | IVARIFGAMATDAFFVAFKLPNLLRIFAEGAFSQAFVPIEDATRVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTAFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFAPTLLNISMIGFALFAAPYNPPVLALAWAVTVGGVLQLVYQLPHLKKLPRINFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASFL-ASGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSFANHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQYGFTAFD | |||||||||||||
5 | 6cc4A | 0.15 | 0.15 | 1.00 | 1.77 | SPARKS-K | IVARIFGAMATDAFFVAFKLPNLLRRIFSQAFVPILAEYKSATRVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTAFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFAPTLLNISMIGFALFAAPYNPPVLALAWAVTVGGVLQLVYQLPHLKKLPRINFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASFL-ASGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSFANHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQAFDALMT | |||||||||||||
6 | 5y50A | 0.12 | 0.12 | 0.99 | 1.13 | MAPalign | ISIMMVGELFLSSTAIAVSFCSVGFSVVF-GLASALETLCEKLGVHTYTGIVSLFLVCIPLSLLWTYIGDILSLIV-AQEAGKFATWLIPALFGYATLQPLVRFFQAQSLILPLVMSSVSSLCIHIVLCWSLVFFGLGSLGAAIAIGVSYWLNVTVLGLYMRATISMSLF-EGMGEFFRFGIPSASMICLEWWSFEFLVLLSGILPNPLEASVLSVCLSTQSSLY-QIPESLGAAASTRVANELGNPKQARMAVYTAMVITGVESIMVGAIVFGARNVFGYLFSTEVVDYVK | |||||||||||||
7 | 3vvnA | 0.11 | 0.11 | 0.99 | 0.69 | CEthreader | IWVSGLGPESLAAVGLFFPVFMGIIALAA-GLGVGTSSAKEGADNVAVHSLILSLILGVTITITMLPAIDSLFRSMGAELAIEYARVLLAGAFIIVFNNVGNGILRGEGDANRAMLAMVLGSGLNIVLDPIFIYLGFGVVGAAYATLLSMVVTSLFIAYWLFVKRDFSPSREILKDILRVGLPSSLSQLSMSIAMFFLNSVAITAGGENGVAVFTSAWRITMLG-IVPILGMAAATTSVTGAAYRNVEKLETAYLYAIKIAFMIELAVVAFIMLFAPQVAYLFTAQVIKGDL | |||||||||||||
8 | 6cc4A | 0.17 | 0.16 | 0.99 | 1.16 | MUSTER | IVARIFGAMATDAFFVAFKLPNLLRRIFAEGFSQAFVPI-DATRVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTAPALTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFAPTLLNISMIGFALFAAPFNPPVLALAWAVTVGGVLQLVYQLPHLKVLPRINFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASFL-ASGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSFANHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQGKFTAFD | |||||||||||||
9 | 6cc4A | 0.16 | 0.16 | 1.00 | 2.65 | HHsearch | IVARIFGAGMTDAFFVAFKLPNLLRIFAEGAFSQAFVPILKQGEVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTATADTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFAPTLLNISMIGFALFAAPFNPPVLALAWAVTVGGVLQLVYQLPHLKKLPRINFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASF-LASGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSSGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQYKFTAFQ | |||||||||||||
10 | 5t77A | 0.14 | 0.14 | 0.95 | 2.11 | FFAS-3D | LFAKYFGVSYELAYFIAIMFPFFLRKVFGEGAMSSAFKSGEEKDKFLSSVINGFSLIILALVILSYFFPELIINLFGAGSAKKLLLITSPSIYFIFLWAISYSILNTNNKFFWPALTPSISNITIIIGTFLSTKY--GIISPTIGFLIGSILMFFSIIKSI-IKHKYYFTIKHFPHFLKLFFPTFMTMVVSQINTVVDMNVVSFYDKGSISYLQY-ASRFYLLPYGLFAVSVSTVVLSKISN---DRKNFNYHLNDALKTTLFFTIPSMVGLIFLSTPIIRFFYE------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |