>PF13398 (202 residues) SAVVALFLVVSRPVWRVSRNVVTIAHEGGHALFALLSGRRLSGITLHSDTSGVTVSRGRT TGFGMVLTGFAGYVAPSLLGLGGAVLVAAEQIRPLLWVSTALLVAMLVMIRNVFGVISVV VTGGIVFAVSWFATQPVQDAFGYLVCWFLLLGGVRPVWELQRKRVRGRAPSSDADQLARL TGVPGTVWVLVFGAVALACLYF |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | SAVVALFLVVSRPVWRVSRNVVTIAHEGGHALFALLSGRRLSGITLHSDTSGVTVSRGRTTGFGMVLTGFAGYVAPSLLGLGGAVLVAAEQIRPLLWVSTALLVAMLVMIRNVFGVISVVVTGGIVFAVSWFATQPVQDAFGYLVCWFLLLGGVRPVWELQRKRVRGRAPSSDADQLARLTGVPGTVWVLVFGAVALACLYF | |||||||||||||||||||
1 | 6ns2A | 0.06 | 0.05 | 0.86 | 0.83 | DEthreader | -I----ADIMK----QQ-FSGVNPSTIE-IQDYSYFRAASVVIFQLHDGRLHPLAITLDSI---ATVAQTADWARHEVTHLDTHMIEEAIIL-NFQDKYINDLKRGFD--SGKYKNYPYANDMYLLWGIIRNFVIVTMCIHTASQHTAVNYLQDYYYS-FV--P-------AKPPALCLTAALPIGKDWLLAAQLPLL-ILI | |||||||||||||
2 | 5medA | 0.06 | 0.05 | 0.85 | 0.83 | DEthreader | KYE------------RQRIAGPNPMVIE-ITNYKGLA-APLVLYAWKGGSLAPIAIQPDITNPIAIFAQMADGNCHEASHLATHLILEPFVLMFTEFALPRELARVGDVNFLPDY--PYRDDAMLLWNAIEVYVVATQVIFVSGQHAAVNYPQYDYMAFIP----------NMP--TYAPPTNILPPQLAARQLELM--LSI | |||||||||||||
3 | 3b4rA | 0.17 | 0.13 | 0.78 | 0.75 | HHpred | ---LVVIIGLSIAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLPI-GGVAMMDKI-PKEGELRIGIAGPLVSFIIGIVLLIVSQFFDGYPLLYLNLMLGFNLILSKKGYKSANIGKSLALIMLLFGLL----SMNIILILVSLFVYFGAEQESRVVEVETIF------------------------------------ | |||||||||||||
4 | 3b4rA | 0.18 | 0.12 | 0.67 | 0.80 | DisCoVER | FWAVLFILLF----------VSVVLHELGHSYVAKKYGVKIEKILL--LPGGVAMMDKIP-KEGELRIGIAGPLVSFIIGIVLLIVS----QFFD-------------------------------------ININGY-PLLYTLSLLNLMLGGFNLI-PA--FP------MDGGRILRAILSIAANIGKSLALIMLLFG-- | |||||||||||||
5 | 3b4rA | 0.17 | 0.13 | 0.79 | 0.35 | MRFsearch | --FLVVIIGLSWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLPI-GGVAMMD----KEGELRIGIAGPLVSFIIGIVLLIVSQFINGYPLLYTLSLLNLMLGGFNGYLKSTKIAANIGKSLALIMLLFGLLSMNIILILVSLFVYFGAEQESRVVEVETIFK----------------------------------- | |||||||||||||
6 | 3b4rA | 0.12 | 0.10 | 0.84 | 0.94 | SPARKS-K | TFILFLVVIIGLAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLPI--GGVAMMDKIPKEGE--------LRIGIAGPLVSFIIGIVLLIVSPLLYTLSLLNLMLGGFNL--IPAFPMDGGRILRAILSKKYGY-----LKSTKIAANIGKSLALIMLLFGLLSMN---------------IILILVSLFVYFGAEQES | |||||||||||||
7 | 5jnqA | 0.11 | 0.10 | 0.94 | 0.58 | MAPalign | -IIPVLFVT--VGFGIIGFLKLVGQFIITGIFAWYLLVGTDMLIPTGGFDGGSFLS------LGIFFVPALFFIMLG-TDNGVNFTD--GLDGLCTSVTILVATFLTIVAIDMGISPITGAVVGSLLGFLLFNPAKVMGTGSLALGGFVAASVIGLIVLSVIIQVKRIFKMAPIHHHFELCGWSETRVVAVFAIVTAILCM- | |||||||||||||
8 | 3b4rA | 0.13 | 0.11 | 0.90 | 0.61 | CEthreader | IGLSIMNNSIFWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLPIGGVAMMDKIPKEG--ELRIGIAGPLVSFIIGIVLLIVSQFFDININGYPLLYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSKKYG-----YLKSTKIAANIGKSLALIMLLFGLLSMN-------------IILILVSLFVYFGAEQESRV | |||||||||||||
9 | 3b4rA | 0.13 | 0.11 | 0.87 | 0.78 | MUSTER | LVVIIGLSIIFWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLPIGG--VAMMDKIPKEGELRIGIAGPLVSFIIGIVLLIVSQFFDINIYPLLYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSKKYGYLKSTKIAANIGKSLALIMLLFGL---------SMN----------------IILILVSLFVYFGAEQ | |||||||||||||
10 | 3b4rA1 | 0.21 | 0.11 | 0.54 | 2.45 | HHsearch | ILFLVVIIGLSIAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLPI-GGVAMMDKI-PKEGELRIGIAGPLVSFIIGIVLLIVSQFFDGYPL--LYTLSLLNLMLGGFNL----------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |