>PF13386 (209 residues) AAFLIGLMGAGHCVGMCGGVAAAITIGMPNNTHQKRRWIYLLNYNIGRLVSYTIAGGLIG AALAGISTLNGTSNPLVYMRLFAALMMIVLGLYIGQWWAGLSQIERVGQKIWRHISPIAT SLLPLKSPVKALPFGFLWGWLPCGLVYSTLTWAAVSGSALNGAAVMFAFGLGTLPAMLAV GGFADKLKNWLKNRIFRRISALLLIIYGV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | AAFLIGLMGAGHCVGMCGGVAAAITIGMPNNTHQKRRWIYLLNYNIGRLVSYTIAGGLIGAALAGISTLNGTSNPLVYMRLFAALMMIVLGLYIGQWWAGLSQIERVGQKIWRHISPIATSLLPLKSPVKALPFGFLWGWLPCGLVYSTLTWAAVSGSALNGAAVMFAFGLGTLPAMLAVGGFADKLKNWLKNRIFRRISALLLIIYGV | |||||||||||||||||||
1 | 5vkvA | 0.11 | 0.09 | 0.75 | 0.83 | DEthreader | LSLTAAFLAGVLSFLLPLVPTYLFYLGGAR--G--RPLFNALFFILGFGAVFFLLGLPFTLLGGLL---F-EHRQ-T-LARVGGVVLVLFGLYMLGLRP---------------------------------------WTPCIG-PIL-GAILTLTAV-GGGVGFLLAYILGLAVPFFVVALFADIKWLARISHYVEVLAGVVLVLGVF | |||||||||||||
2 | 6l85A | 0.12 | 0.10 | 0.87 | 1.00 | DEthreader | IAGILGFIMFSIGANDVANSMATAVGARA---IT--VRQAALIAMFLEFLGAVMFGSHVSQTIV-G----E-N--NWKTFLFIVLSWVVSP-V-------------LGGLISFVMFLIAIFIAVRAQILTSCYVSFSHGANDANAAGPVAAVMIVSPVE-IPFLALLLGGIGISLGVFFLGQKVMETVGEKTNVGVLKNIVISWLLIVP | |||||||||||||
3 | 5vkvA | 0.20 | 0.17 | 0.87 | 1.67 | HHpred | AAFLAGVLSFSPCVLPLVPTYLFYLGGAR-----GRPLFNALFFILGFGAVFFLLGLPFTLLGGLLFE------HRQTLARVGGVVLVLFGLYMLGLRP-RW--G-V----SLRY----EG--ETSRPLGAFLLGATLALTPCGPILGAILTLTA---VGGGVGFLLAYILGLAVPFFVVALFADRIKGWLISHYVEVLAGVVLVLVGV | |||||||||||||
4 | 3o7pA2 | 0.08 | 0.06 | 0.78 | 0.55 | DisCoVER | HWRWAVLAQF-CYVGAQTACWSYLIRYAVEEIGMTAAANYLTGTMVCFFIGRFTGTWLISRF---------------APHKVLAAYALIAMALCLISAF----------------------AGGHVGLIALTLCSAFMSIQYPTIFSLG---IKNLGQD--TKYGSSFIVMTI-IGGGIVTPVMGFVSDAANIPTAELIPALCFAVIF- | |||||||||||||
5 | 5vkvA | 0.19 | 0.17 | 0.87 | 0.40 | MRFsearch | AAFLAGVLSLSPCVLPLVPTYLFYLGG-----ARGRPLFNALFFILGFGAVFFLLGLPFTLLGGLLFEH------RQTLARVGGVVLVLFGLYMLGLRP-----------------RWGVSLRETSRPLGAFLLGATLALGWTPCIGPILGAILTLTAVGGGVGFLLAYILGLAVPFFVVALFADRIKGWLRSHYVEVLAGVVLVLVGV | |||||||||||||
6 | 2n4xA | 0.18 | 0.15 | 0.84 | 1.40 | SPARKS-K | MAFALGILSVFPAVLPVVPLI---FAGSR------GRALDAFLIVAGLTISMLILGYTA-------------SLFFGFFRVVAMLFLLIFALILLSDEEKVSIFASRMTSGL-------SWKIQTLPSFFGMLLAFLWL--PA--ILPFAGIAISQTLLSENPLVMLSYGLGMAVTIAAVFKMGEKFVKAN-FQLIRKVTGAIVLLYLA | |||||||||||||
7 | 6l85A | 0.10 | 0.09 | 0.95 | 0.89 | MAPalign | LGFIMAFSIG---ANDVANSMATAVG-----ARAITVRQAALIAMFLEFLGAVMVSQTIVKMMGFGLVAVGINGVFLFIVLSWVVSPVLGGLISQPLSESFLLGIAFSLVTFFVVHFAVRKLIKRAQILTSCYVSFSHGANDVANA--AGPVAAVMITVEIPFLALLLGGIGISLGVFFVMSTATTVLLASISTTHVVVGAVTGVGFAR | |||||||||||||
8 | 6l85A2 | 0.10 | 0.10 | 1.00 | 0.52 | CEthreader | IAGILGFIMAFSIGANDVANSMATAVGARAITVRQAALIAMFLEFLGAVMFGSHVSQTIVKGIVEVEKVQPVELMYGALSALIAASFWILIATNWGYTFLFIVLSWVVSPVLGGLISFVMFKQILTSCYVSFSHGANDVANAAGPVAAVMIVASTPKTVEIPFLALLLGGIGISLGVFFLGQKVMETVGEKITTLTNSRGFTVDFSTAT | |||||||||||||
9 | 2n4xA | 0.18 | 0.15 | 0.83 | 1.09 | MUSTER | MAFALGILSVFPAVLPVVPLIFAGS---------RGRALDAFLIVAGLTISMLILGYTASLFF-------------GFFRVVAMLFLLIFALILLSD--------ELDEKVSIFASRMTSGLSWKIQTLPSFFFGMLLAFL-ILPFAGIAISQTLLSE---NPLVMLSYGLGMAVTIAAVFKMGEKFVKAN-FQLIRKVTGAIVLLYLA | |||||||||||||
10 | 5vkvA | 0.21 | 0.18 | 0.86 | 4.63 | HHsearch | AAFLAGVLSFSPCVLPLVPTYLFYLGGA---R--GRPLFNALFFILGFGAVFFLLGLPFTLLGGLLFEH------RQTLARVGGVVLVLFGLYMLGLRP-R-WG-V-----SLRY----E--GETSRPLGAFLLGATLALTPCGPILGILTLTA----VGGGVGFLLAYILGLAVPFFVVALFADRIKGWLISHYVEVLAGVVLVLVGV | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |