Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | LERDFEAFLRLSLKLDPQFVTPSFEDFLRAKLLDNNTPLTEQAVQRMLTHGQYAWAKRALDKEFPDVVEILIRQAAEHGFAFAIRADWTAEDLVKASREWATAIVTEAKGDLSQVDMLASQIKSAAADIREVEEKMQTPAWRLADSLRQRVYETKISVETSVGSTAREKLGELRCLLRLGIVYGSIQKQEAQQVLEYLRSLRPELFVEEPHDGFTRFAAWLRSIFA |
1 | 4akkA2 | 0.09 | 0.05 | 0.53 | 0.81 | DisCoVER | | -------------------------------------QIAG------------------------------------RMVALYSFMQG-K--LA-GQE-RALGALGFARGQ---FSDELRQQLVDRIDGQQPC----FSFQALAQPPQTALFAEQCQLRRVACTRQPPADEGETALRWFCAQTRL---------------QLRGVE-----ELLIDLLPLVRQQA- |
2 | 4ui9A | 0.10 | 0.08 | 0.85 | 0.83 | DEthreader | | RSYSLAAGLALGMVCLGHGLMNVPEQLYQYMVGNVDVTCP-GATLALAMIYLKTNNRSIADWLRAPDTLLDFVK-PEFLLLTLRCLDDILNKWVDSN--VPQIIRE--NLNLETLSQAHVYIIAGA-CLSLGFRFAGS------------------------ASVTGPHNLETCLSVVLLSLAMAGLCRFLHMKTGMNYGF-PAHSTDNR--YHLQ-ALRHLYVAA |
3 | 3w3tA | 0.08 | 0.08 | 0.99 | 0.56 | CEthreader | | SVLKGKCMECATLIGFAVGKEKFHEHSQELISILVALQNSDDDALRSYLEQSWSRICRILGDDFVPLLPIVIPPLLITAKATQDVGLIEEEEAANFQQYPDWDVVQVQKHIAIHTSVLDDKVSAMELLQSYATLLRGQFAVYVKEVMEEIA--LPSLDFYLHDGVRAAGATLIPILLSCLLAATEELVLLWHKASSKLIGGLMSEPMPEITQVYHNSLVNGIKVMG |
4 | 6wb92 | 0.09 | 0.09 | 0.96 | 0.75 | EigenThreader | | LLQLENEMKIYMKSGDSALTFFLMEMLFYVLVYRNQDVDAQVVYNTLRDRLGEIMKATLLQINGNDKGAIEYLENLLNDDLE---YETDFVTYVSIAKKLIAIKTTSKNLSQESVLKEVVALTDKFYCLEQVLCITPFNYACFGRLSETLYYEALRSK----KQTKTELLEKALKNALRSVELSELYLKGWALVNIISRELG---RNKQNDLIKLSASKLKEISAK |
5 | 4knhA | 0.14 | 0.12 | 0.82 | 0.31 | HHpred | | ----------FKALIA--KPARDFVNDCL-KLAD-ELDLNEKESARILIDCDADVET--QSRPLLDCMRLILEIAADE--------DID-AGLQESFGVAAEDKIFGERQVKKFIPRCMEAMKGVRSMLQCMADKANARNM-----LQQASLDNQETLDFSRLSLVEQHECLASILHAAVQ-RHHATIADFQDFIKILRKWDK-------YDHFLLIPVLAAY--- |
6 | 4knhA | 0.16 | 0.13 | 0.81 | 0.42 | MRFsearch | | -EDFVNDCLKLADEL-------DLNEKESARILIDCRPLWECGVIRFHQERKY----------LLDCMRLILEIAADE---------DIDAGLQESFGVAAEDKIFGIRQVKKFIPRCMEAMKGVRSMLQCMADKANADNQETLDFSRLSLVE---------------QHECLASILHAAVQRHHATIADFQDFIKILRKWLNDFICKGLPVLGAAVRAWWIAEHN |
7 | 6xnsA | 0.23 | 0.22 | 0.95 | 0.85 | FFAS-3D | | LKTFLENLRRHLDRLDKHI------KQLRDILSEN--PEDERVKDVIDLSERSVRIVKTVIKIFEDSVRKLLKQINKEAEELAKSPD---PEDLKRAVELAEAVVRADPGSNLSPDALAAAARAASKNLAKAAQEIMRQASRAAEEAARRAKETLEKAEKDGDPETALKAVEARALNQIATMAGSEEAQEARVASEAARLAERVLELAEKPEVARRARELQEKVL- |
8 | 6w2rA | 0.09 | 0.08 | 0.89 | 0.68 | SPARKS-K | | ERRELEKVARKAIEAAREGNTDEVREQLQRALEIARESGT-KTAVKLALDVALRVAQEAAKRGNKDAIDEAAEVVVRIAEES------NNSDALEQALRVLEEIAKAVLKKTEDAKKAVKLVQEAYKAAQRAIEAAKRTIKLAIKLAKLAARAALEVIKRPKSEEVNEALKKIVKAIQEAVESLSGDPEKREKARERVREAVERAEEV------------------ |
9 | 2qmrA | 0.11 | 0.10 | 0.89 | 0.67 | CNFpred | | KESGILVLGAIAEGCMQGMI-PYLPELIPHLIQSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-----------SNKRVQEAACSAFATLEEEACELVPYLAYILDTLVFAFSKYQ------HKNLLILYDAIGTLADSVGHHLN------KPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVAQSGFLPYCEPVYQRCVNLVQKTLA |
10 | 3feyA | 0.09 | 0.08 | 0.87 | 1.00 | DEthreader | | VFREYHIVELELCKLQPGSLPQVLAQATEMLYRLTMNTCVDRFINWFSHHLSNFQFRWSW-EDWSCLKPKFVREVL----EKC------------MRLSYHQRILDIV-PP-TFSALCPANPTWRNHPQMIAVLVDICSTIRLFVIFQRFIMILTEHLVRCESVLTYKCIERLQQIFLQHHQ-I-IQQYMVTLENLLFTELDPHILA-----VFQQFCAL--QA-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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