>PF13218 (321 residues) KRMTSEVVAFSPSRLNLAELEERLASQTFFTQSDIEYAEHDENSFYYTCHYGDEELLFLV SLAPRAPELEINPYYSTDPLSAGLLAEVNQTEQDIYVECLLQNDVLRSYRYQLKMVQILV PDLLLGIDISAAGRGFTREWLNFQLENDVQLNIESLYTIHAIYDTENSPPTMYWFHTHGL LRCGIPEVELLLPHTINAYYGIPDLLRSFIGQSLNEGKVLFNEPMLCGQTEKQLEYIVAL PYQEGIRQINKNTPIDQLKPLEEIDYSHDNMPENEFLGDRGDRDDQHDHPSCMLFRVNES SPVLQTFFRGFDDDAAIMFYR |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | KRMTSEVVAFSPSRLNLAELEERLASQTFFTQSDIEYAEHDENSFYYTCHYGDEELLFLVSLAPRAPELEINPYYSTDPLSAGLLAEVNQTEQDIYVECLLQNDVLRSYRYQLKMVQILVPDLLLGIDISAAGRGFTREWLNFQLENDVQLNIESLYTIHAIYDTENSPPTMYWFHTHGLLRCGIPEVELLLPHTINAYYGIPDLLRSFIGQSLNEGKVLFNEPMLCGQTEKQLEYIVALPYQEGIRQINKNTPIDQLKPLEEIDYSHDNMPENEFLGDRGDRDDQHDHPSCMLFRVNESSPVLQTFFRGFDDDAAIMFYR | |||||||||||||||||||
1 | 4fnvA2 | 0.06 | 0.05 | 0.79 | 0.59 | DisCoVER | -TYPNVVPMFNDSWSFPDSEELKYMTAQGRTPNNDMKLFDQAGYYVLRNGWT-PASTVMILSN-------NKSSLQPDNG------------TFELYHNGR------N---FF-PDS-GVCTFRHNTLNIKKAAGKLLKS-----------EEGATELVVFENQG--YDNLKHRRAVFYV-NKKFFVLVDEGIGNAEGTINLSFNLCE--GTASEVVMDTKNGVHTAFSN---NNNIIVRTFANPFTGRIAYNTRQSYTIDMNKSADE------TARY-----------ITVILPVGSTDTSSISAKFIGYENSASVEVV- | |||||||||||||
2 | 6pcvA | 0.04 | 0.02 | 0.71 | 0.67 | DEthreader | ----LAKRLLILPQ--------------------------SVQRGS-----------AEVAGLQV--RKIYSINEDLVFILSFSRRPLR---GMLCAGQCILMN------YHTHEDAQE-R-----VHLEHIVEPGCLTAKILEAQAALGLFCPTCHINLMEVSYPKNPMSYTQHCITTMAAPSAATFEQAAYSRDASRKWL-QV--GVLLHCQSLLLITLELVTF-SFKQLDFIFYRLHTASKVQQYYRKLRAFYLRSKIQLIRPAELRAILARSHGLIATMRGPRVEI------------------------------- | |||||||||||||
3 | 5jmdA3 | 0.08 | 0.06 | 0.78 | 0.77 | CEthreader | ------------------------------LPDYMSKGFLKSGFFVFRNSWGMDATQMVVKAGPKGFW--------------------HCQPDNGTFEMWFNGK---------NLFPDSGSYVYAGEGEVMEQRNWHRQTSVHNTVTLDNKNLETTESVTKLWQP---EGNIQTLVTENPSYKNFKHRRSVFFVDNTYFVIVDEVSGSAKGSVNGEIANSREDMTFLTQFEDGSNMKLQCFGPEGMSMKKEPGWCSTAYRKRYKRMNVSFNVKKDNEN---------AVRYITVIYPVKKKFDAKFKNKTFDENGLEIEVK | |||||||||||||
4 | 6wyaA | 0.07 | 0.06 | 0.79 | 0.72 | EigenThreader | TFEPYLYALLKD-------DSAIEEVKKITAER-------HGT-----VVTVKRVEKVQKKFL----------------------------GRPVEVWKLYFTHPQDVPAIMDKIRE---HPAVIDIYEYDIPFAI--RYLIDKGLVPMEGDEELKLAFDIETLYHEGEEPILMISYADE----EGARVITWKNVDLPYSTEREMIKRFLRVVKEKDPDDGSEPKIQRMGD--RFAVEVFDLYPVIRRTINLPQPKEKVYAEEITTAWETGENLERVARYSMEDAKVTYELG-----------KEFLPMEAQLSRLIGQSL | |||||||||||||
5 | 4bkwA | 0.13 | 0.07 | 0.54 | 0.35 | HHpred | ----------------------------------------------------------------------------------------------------------------------------LISTYAV-EEKPSQISVMQQLED--PDPLNLLSMVKIVNYVN----RKCWFTTKGMHAVGQSEIVILLQCLPDEKLPIFNHFVQLYRDALAGNVVSNLGHSFFGYSLQDLPYLFIQPWAKVYRLYP--CPLFSV------RFRKPFGTGHTIMNLLADFRNYLPVVQGLVVDMEVRKTIPSNRYNEMM--------- | |||||||||||||
6 | 2fgtA | 0.09 | 0.06 | 0.65 | 0.57 | MRFsearch | ---EAKLDLQFSDTIPIDIFQTLFKWYSSFDHILIPFNETKANKKIYLVSYSQLILEVTVESA-----------------NYRNIMNDLKNPAFSLFSIGSKKEFLLP------------DKKEFVTES------IKTNTFKQALF------SDPSIVRENVLTDG---ISRLDVNLS------QRQVQFQQLVQ-STSYQTGELIKKSQKYLEDTG--SWTDHYQFFNINDSQQLSFY-IFMDQIPVIN--------------------------------------ATSAITVQWANDDILSY---------------- | |||||||||||||
7 | 2ke5A | 0.11 | 0.06 | 0.51 | 0.55 | FFAS-3D | -----KVIMVGSGGVGKSALTLQFMYDEFVE----DYEPTKADSYRKKVVLDGEEVQIDILDTAGL-----------EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEPLLVVGNKSDRRQVPVEEARSKAE-----------------------------------EWGVQYVE----TSAKTRANVDKVFFDLMREIRTKKMSENK--------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 1t47A | 0.08 | 0.06 | 0.79 | 0.49 | SPARKS-K | HGDGVVDLAIEVP--DARAAHAYAIEHGARSVAEPYELKDEHGTVVLAAIATYGKTRHTLVDRTGYDGPYLPGYVAAAPIVEPPAHRT--FQAIDHCVGNVEGRMNEWVGFYNKVMG-----------FTNMKEFVGDDIAT----------EYSALMSKVVADGTLK-----------------VKFPINEPALAKKKSQIDEYLEFYG----------GAGVQHIALNTGD--------IVETVRTMRAAGVQFLDTPDSYYDTLGEWVGDTRV--PVDTLRELK-----ILADRDEDGYLLQIFTKPVQDRPTVFFEI | |||||||||||||
9 | 3c7nA | 0.08 | 0.06 | 0.71 | 0.87 | CNFpred | -------------------DFEQESKHFTSKLVELD-----DKKTGAEVRFAGEKHVFSATQLA---------AMFIDKVKDTVKQDTKANITDVCIAVPP-WYTEEQRYNIADAARIAGLNPVRIVNDVT------AAGVSYGIFKTDLPEGPRIVAFVDIGH------SSYTCSIMAFK---KGQLKVLGTA-CDKHFGGRDFDLAITEHFADEFKID-NAPFSVESVMNDVDVSSQLSREELEELVKPLRVTEPVTALAQAKLSA-------------------EEVDFVEIIGG----------------------- | |||||||||||||
10 | 5kdvA | 0.05 | 0.03 | 0.66 | 0.67 | DEthreader | ---------RQQSMPVSG-----------------------SEETL------------IGRMARLSIVGLNT-QRI-GSTRRPFLPYGGLLGAASQFLDIQPGEDSSQAIADFIQALD-ADKADWLEIRSSVEVHAKVEKVRGIDGDVQRFEEVFIDDAY---------------GTQH---P--LGLQVNKVYGGRSGEISNQIFPLHKDWRVLRE---------VNYAYIAFQWIWTLLYLHQRQVNKAALGYGTY--RPGNSG---------D-----------------LGLSRDQRTFALWG---ANNRTNEY--- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |