Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | LCALLAAALVFFCADFAKAGEKPTRASLFETLQSVSDVHFQLTEKERTKTDMISLLEPYMEHAMAVKYVEANAFPEQAGWIFYGTDAPEVAIPFFSYGGDTKVAGKDGSYTVYEFV |
1 | 5i6cA | 0.05 | 0.04 | 0.84 | 0.83 | DEthreader | | QALAMLAGVVTPPLIISSSLSLLQQYLVSTSLIVCGLLSMVQITRIGGAVLADGNSAAMTPM--TT-F-AQNN--------ANRWAGYCCCLILIVAIFAKFAAAIPNM------- |
2 | 6jc4A | 0.08 | 0.07 | 0.91 | 1.00 | DEthreader | | SSNL-VGGY-SWS-QGLE-WAVFWQRRQMTGFFTDLPLFARLYRAIAQ-RWTAYLLACRELREEERNRGAAFALSCPPPWAGMLGWIMALSLGYS-----IEAVGVKLVPALILCA |
3 | 2rsxA | 0.13 | 0.10 | 0.81 | 0.65 | HHpred | | ----------------KNTSGDLSQKQALQLALSAREHFWNTGSDLGTKAKAVNYLTPIFTKTAIEKGFKDHFTVSKGKLAVPIGDGDN----LLNWKKSTAKLIKGSTITY-EF- |
4 | 2rsxA | 0.08 | 0.08 | 0.92 | 0.62 | DisCoVER | | GDLALLALSAREHFWNTMSGHNPVKKAVCPSGTFEYQNLQYVYMCLGTKAKAVNY-----LTPI--FTKTAHFTVSKGKLAVPLISGSTITYE-FTVKRKVTFVKENKKWKVNAV- |
5 | 2rsxA | 0.17 | 0.13 | 0.77 | 0.77 | MRFsearch | | -----------------------SQKQALQLALSAREHFWNTMSDLGTKAKAVNYLTPIFTKTAIEKGFKDYHFTVSGKLAVPIGDGDNL----LNWKKTAKLISKKGSTITYEFT |
6 | 5aiwA | 0.10 | 0.09 | 0.83 | 0.71 | SPARKS-K | | --------------------SNTNQSESEKIIKEFYKTVYNYEKKEISMTTVKELATDNVYQELQNEINVNNSVNENEIKILASKDNSQQYLVTADFEINQLIQIKNQKITQRTTI |
7 | 4ldsA1 | 0.07 | 0.07 | 0.97 | 0.63 | MAPalign | | -EGIVVSSMLIGAIVGAGADKLGRRRLVMLIAIVFIIGALILAASAL-LIIGRLIIGLAVGITIGILAAYLVNFADIEGWRWMLGLAVVPSVILLFMPESPRWLLENRNEEAAVM- |
8 | 4ut1A | 0.05 | 0.05 | 0.97 | 0.66 | CEthreader | | QLVAAGQQYSQLRQSVNSQLTDT-VTQINSYTSQIAQLNEQIASASSP-NQLLDQRDLAVSKLSQ--LAGVQVVQSNGNYSVFLSGGQPLVVGNASYQLATVASPSDPSELTIVSK |
9 | 2rsxA | 0.11 | 0.10 | 0.91 | 0.56 | MUSTER | | ALSAREHFWNTMSGHNPKVKKAVCPSGTFEY--------VYMCSDLGTKAKAVNYLTPIFTKTAIEKGFKDYFTVSKGKLAVPIGDG---NLLNWKKSTAKLISKKGSTITYEFTV |
10 | 2rsxA | 0.10 | 0.09 | 0.84 | 1.01 | HHsearch | | ---------------GKNTSGDLSQKQALQLALSAREHFWNTMSDLGTKAKAVNYLTPIFTKTAIEKGFKDYFTVSKGKLAVPIGDGDN----LLNWKKSTALSKKGSTITYEFTL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|