Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | MGFIKMVLLLIGTLLLIGFTIVVLLVYFGRKLYLSWAKPYKRAHESIEKLSNKSTPFLQEFTQHPLFYRWIRTEGKKEQKAFNTLFCVANQRTREQVFSMLPKDRQKKVHSMAKSTKKITNEDMDI |
1 | 5hb4B | 0.07 | 0.06 | 0.94 | 1.17 | DEthreader | | TPEFLETVELEEKVLIEWLTVRNRANLLLTARLNLLQAWANLLLVMIESN--DFKSPKMAFLLQ-ALQAILTLEAFELARVAKVLLWKLDFFGN-IGDKLFQFQLCLIRLYYSYTCQTA-I--ASP |
2 | 4qndA | 0.07 | 0.04 | 0.58 | 0.58 | DisCoVER | | -------MLVMGLI-SPTMPQLYKLYVEHALGLSLTWLYSFIALLWTIYGI--------YHKNP-TIWVGNCLGFLMYV--A-----------------------------MVV----GIIAHTT- |
3 | 3dpgA | 0.04 | 0.03 | 0.84 | 0.83 | DEthreader | | PVAGDIFEIVSSAMWNCAARWNSLMVGPSPRRQV-VVVLP---FQNDEMWR-----EE--IAGLTPNQILLSGAYQLISL---AV--AFKSLVHTLYVP-PTA-ADLARRFFAFLNERMELVNG-- |
4 | 6rd422 | 0.06 | 0.06 | 0.96 | 0.51 | CEthreader | | -VDSRTAAQALYALAKLGRADKATVDALLKSFKKGTESA-SDAAAASFALGSLSFKAEKAIV--DALKASAGDLAPAQAVEAAYGLALSGATDAEAFKA-LFGVVAPAIEKAPDALEVSSLAQLHV |
5 | 2vglB1 | 0.05 | 0.05 | 0.97 | 0.58 | EigenThreader | | KGEIFELKAELEKRKEAVSLFPDVVNCMQTFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLC-EPLRKCLKDEDPYVRKTAAVCVAKLHDIGFLDSLRDLIAMVVANAVAALSEISESHPNS--- |
6 | 3pkrA2 | 0.05 | 0.04 | 0.72 | 0.40 | HHpred | | ------------------------------AEIFNRL-GQKSAKTTLARIESVDNTDIVK-LDNFAIREILKV---ADKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDV |
7 | 6v1qA | 0.12 | 0.09 | 0.75 | 0.33 | MRFsearch | | --IFFILYIVINTYTFMSFFLAVVYNNYKKYLKEEVRQLVKAKRIKMCRAFSLPSRFIRQMVHHRVFVYAYDLI-----ILVNAVFIGLDEENPVVSNAEW------------------------- |
8 | 6w2wA2 | 0.15 | 0.13 | 0.83 | 0.57 | FFAS-3D | | --AAKECLKAVRAALEAALLALLLLAKHPAQDAVQLATAALRAVEAACQL-------AKQYPNSDIAKKCIKAASEAAEEASKAAEEAQSQKARDEI-----KEASQKAEEVKERCER-------- |
9 | 3pkrA2 | 0.06 | 0.05 | 0.80 | 0.58 | SPARKS-K | | ------------IEVGGLRAVAEIFNRLGQ----------KSAKTTLARIESVDNKLAGAIKEMFAIREILKVA---DKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDV |
10 | 5ykeB | 0.14 | 0.13 | 0.99 | 0.60 | CNFpred | | LALLLQRTFLQASYYVAIETGINLRGAIQTKIYNKIMHL-EMTAGQICNLVAIDTNQLMWFFFLCPNLWAMPVQIIVGVILLYYILGVSALIGAAVIILLAPYFVATKLSQAQRSTLEHSNERLKQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|