>PF13002 (203 residues) VTLSLVQKIHFHKPFVPNISSMQTCMNCKTKITNMKSWEIQSNTQDLSVGSHSYPFSYLI PGSVPCSSSLGATAETQVKYELIAVVTYIDPHRNSFSSGHSTPRKEGSSSKKRLLQLAMP IAVTRSIPRGPDKNSLRVFPPTELTAAAVLPNVVYPKSTFPLEMKLDGVSSGDRRWRMRK LSWRIEETTRVKAHACPVHKHEL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | VTLSLVQKIHFHKPFVPNISSMQTCMNCKTKITNMKSWEIQSNTQDLSVGSHSYPFSYLIPGSVPCSSSLGATAETQVKYELIAVVTYIDPHRNSFSSGHSTPRKEGSSSKKRLLQLAMPIAVTRSIPRGPDKNSLRVFPPTELTAAAVLPNVVYPKSTFPLEMKLDGVSSGDRRWRMRKLSWRIEETTRVKAHACPVHKHEL | |||||||||||||||||||
1 | 3lh9B | 0.10 | 0.08 | 0.78 | 1.76 | HHpred | IKIEFIGQIELYYDR-------------GNHHEFVSLVKDLARPGEITQ-SQAFDFEFTHVEKPYESYT---GQNVKLRYFLRATISRRL---------------------N-DVVKEMDIVVHTLSTYPELNSKMEVGIEDCLHIEFEYNKSKYLKDVIVGKIYFL-SVEI----KIKHMEIDIIKRETTGTGPNVYHEND- | |||||||||||||
2 | 1cf1C | 0.16 | 0.15 | 0.90 | 1.33 | SPARKS-K | VYVSLTCAFRYGQ-EDIDVMGLSF----RRDLYFSQVQVFPPVGASGATGANTYPFLLTFPDYLPCSVMLDVGKSCGVDFEIKAFATHSTDVEEDKIPK------------KSSVRLLIRKVQHAPRDMGPQPEASWQFFMKPLRLAVSLSKEIYHGEPIPVTVAVTNSTEKT----VKKIKVLVEQVTNVVLYSSDYYIKTV | |||||||||||||
3 | 3lh9B | 0.10 | 0.08 | 0.78 | 2.96 | HHsearch | IKIEFIGQIELYYDRG-------------NHHEFVSLVKDLARPGEITQ-SQAFDFEFTHVEKPYESYT---GQNVKLRYFLRATISRRL---------------------N-DVVKEMDIVVHTLSTYPELSIKMEVGIEDCLHIEFEYNKSKYLKDVIVGKIYFL-SVEI----KIKHMEIDIIKRETTGTGPNVYHENDT | |||||||||||||
4 | 2wtrB | 0.16 | 0.14 | 0.85 | 1.35 | FFAS-3D | VYVTLTCAFRYGRVGLT-----------FRKDLFVANVQSFPERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGKACGVDYEVKAFCAENLEEKIHKRN---------------SVRLVIRKVQYAPERPQPTAETTRQFSDKPLHLEASLDKEIYHGEPISVNVHVTNNTNKT----VKKIKISVRQYADICLFNTAQYKCPV | |||||||||||||
5 | 2wtrB | 0.18 | 0.15 | 0.84 | 1.73 | HHpred | VYVTLTCAFRYGR-----------VGLTFRKDLFVANVQSFPPAKPLKLGEHAYPFTFEIPPNLPCSVTLQDGKACGVDYEVKAFCAENLEEK----------------IHKRNSV-RLVIRKVQYAPPQPTAETTRLMSDKPLHLEASLDKEIYHGEPISVNVHVTNNTNK----TVKKIKISVRQYADICLFNTAQYKCPV | |||||||||||||
6 | 1sujA | 0.15 | 0.13 | 0.87 | 1.32 | SPARKS-K | VFVTLTCAFRYGR------DDLDLIGMSFRKDLYSLATQVYPPETKEPLGAHAYPFCFKMGTNLPCSVTLQPGKSCGVDFEVKAFCAEN-----------------LEEKIHKRNSVQLVIRKVQFAPANLGVTRQFMLSDRPLHLEASLDKEIYHGEPINVNVKINNTTGK----IVKKIKIIVEQVTDVVLFSLDKYVKTV | |||||||||||||
7 | 6h7wJ | 0.09 | 0.07 | 0.78 | 2.95 | HHsearch | IKVQFIGTIEMFFDRG------------NHYEFLSLVQEL-AAPGELQHP-QTFDFNFKNVEKQYESYN---GINVKLRYFVRVTVSRRM---------------------A-DVIREKDIWVYSYRIPPELNSKMDVGIEDCLHIEFEYSKSKYLKDVIVGRIYFL-LVRL----KIKHMELSIIRRETTGVAPNQYNESET | |||||||||||||
8 | 1cf1C | 0.16 | 0.14 | 0.89 | 1.30 | FFAS-3D | VYVSLTCAFRYGQEDIDVMGLS------FRRDLYFSQVQVFPPVGIKKLGANTYPFLLTFPDYLPCSVMLQPAKSCGVDFEIKAFATHSTDVEEDKIPKKS------------SVRLLIRKVQHAPRDMGPQPRAEASMSDKPLRLAVSLSKEIYHGEPIPVTVAVTNSTEKT----VKKIKVLVEQVTNVVLYSSDYYIKTV | |||||||||||||
9 | 4r7vA | 0.14 | 0.07 | 0.50 | 1.20 | HHpred | LKIHARGHAKVRWTES--------TQNYTEEVEYNHKDILIGHFHTIHSGRHEYAFSFELPQPLATSFE---GRHGSVRYWVKAELHRPW---------------------LLPVKLKKEFTVFEHIDINLEHH--------------------------------------------------------------------- | |||||||||||||
10 | 2wtrB | 0.16 | 0.14 | 0.84 | 1.31 | SPARKS-K | VYVTLTCAFRYG-----------RVGLTFRKDLFVANVQSFPPAPEKKLGEHAYPFTFEIPPNLPCSVTLDTGKACGVDYEVKAFCAENL----------------EEKIHKRNS-VRLVIRKVQYAPPTAETTRQFLMSDKPLHLEASLDKEIYHGEPISVNVHVTNNTNKT----VKKIKISVRQYADICLFNTAQYKCPV | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |