>PF12954 (413 residues) KIFPKDWLQLHPYKQSTPVDSYYTGIANRIYDIMEKTELVNSFEGEETKQICIRMAAYFE DVISGMGIWRAFILTHKELYGKYLPFYTPDDHYYDDEVNLEDVRFLLWHYTQQYHGYRKG TFVSPDNPANESTGMLIYDLFCKEWTTAPENTRMAKLFALDTRYERQEDYDRLLQWFHYE SYILPESARELSDFAHDRWKEQPDLNQEQLNNLLVNSHGMMAYTSKTSLLGLTSPQWLAK ILPAEHPDHAVFQNTADESVATLPDDMLEENRQQYETFRKAAGGKLLLYFDKTEDAQTFI TETSGLIPAENFHLPEDWQGKKLAIYATPEEGAQVITRDVELIKDENNPFYDANRAAKQA LSFFIVKHCSVYFLKELVDRGMLADAQTKSLTSPERGKAIIQDNWKFLSRYFI |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | KIFPKDWLQLHPYKQSTPVDSYYTGIANRIYDIMEKTELVNSFEGEETKQICIRMAAYFEDVISGMGIWRAFILTHKELYGKYLPFYTPDDHYYDDEVNLEDVRFLLWHYTQQYHGYRKGTFVSPDNPANESTGMLIYDLFCKEWTTAPENTRMAKLFALDTRYERQEDYDRLLQWFHYESYILPESARELSDFAHDRWKEQPDLNQEQLNNLLVNSHGMMAYTSKTSLLGLTSPQWLAKILPAEHPDHAVFQNTADESVATLPDDMLEENRQQYETFRKAAGGKLLLYFDKTEDAQTFITETSGLIPAENFHLPEDWQGKKLAIYATPEEGAQVITRDVELIKDENNPFYDANRAAKQALSFFIVKHCSVYFLKELVDRGMLADAQTKSLTSPERGKAIIQDNWKFLSRYFI | |||||||||||||||||||
1 | 1eu8A | 0.10 | 0.06 | 0.60 | 0.58 | DisCoVER | DVFLMDVA-PVYIDAGLLY--YRKDLLEKYYSKPPEQELVEMA------QKIQ-N--FWG-FVWQDEYVYSNGSLGEFKDGKWVPTLNKP----ENVEALQFMVDLIHKYK--I-------SPPTYTEMTEEPVRLMFQQG--NA-AFERNWPYAAPLPHFP-------GHKSAATLGGWHIGISKYSD------------------------------------NKALAWEFVKFV--------------------------------------------------ESYS------------------------------VQKGFAM---LGWNPGRVDVYDDPAVVSKS---HLKELRAVFENRPIVPYYPQLSEI----IQKYVNSALAGISPQALDKAQKEAEELVK-- | |||||||||||||
2 | 2y8nA | 0.06 | 0.04 | 0.72 | 0.67 | DEthreader | -EAA--YN--WWIEVRR-KAVAASLSHMT-PT--I-LP--YEKLV--MNKTKNVRG-AFPFPWVCASFFNAQENADSVSVVGAGGGNVTESYGNVISIAKKFG---------------------------------MRKEEIPVLVKTSPWISVEELSNYSMTPGYF--FDSFAIPQGVEDPQSGLSIGRNLSGQNYMNFMMRNYGPEGMD--D---W-LGGCLESA----CGTGVHFI-----DVVNRCNINFESCGFSMNFGSEKIFAACVNA-PK--NA--------IFKAYHYY---TADGR---------------SVSAAAG--TDKNAIFEAMNLKLHPTAVKGTRLLL--Y--FHVQ-------FN--VVDSKTLR-DAQ--TPEKYRELMQYWCEIGKPIQ--V | |||||||||||||
3 | 6n1zA | 0.07 | 0.07 | 0.99 | 0.74 | CEthreader | HGAMRVLTEFTREVTDTQMPLVAPVILPEMYKIFTMAEVYGIRTRSRAVEIFTTCAHMICNMEELEGAAKVLIFPVVQQFTEAFVQALQIPDGPTSDSGFKMEVLKAVTALVKNFPKHMVSSMQQILPIVWNTLTESAAFYVRTEVNYTEEVEDPVDSDGEVLGFENLVFSIFEFVHALLENSFKSTVKKALPELIYYIILYMQITEEQIKVWTANPQQFVEDEDDDTFSYTVRIAAQDLLLAVATDFQNESAAALAAAATRHLQEAEQTKNSGTEHWWKIHEACMLALGSVKAIITDSVKN-----GRIHFDMHGFLTNVILADLNLSVSPFLLGRALWAASRFTVAMSPELIQQFLQATVSGLHETQPPSVRISAVRAIWGYCDQLKVSESTHVLQPFLPSILDGLIHLAA | |||||||||||||
4 | 6ajfA | 0.09 | 0.09 | 0.96 | 0.63 | EigenThreader | AAIPLVAVVLFFVFGTVIAAALPAIIGGLAIAGALGIMRLVAEFTVVTLIGLGIAIDYGLFIV-----SRFREEIAE----GYDTEAAVRRTVMTSGRTVVFSAVIIVASSVPLLLFPQGFLKSITYAIIASVMLAAILSITVLAAALAILGPRVDALGVTTLLKGFWGRLVNVVMKAFGSVVLPIKAALMSTMGILTWMFVDGHGSDYEVFLVSRMVEARERGMSTAEAIRIGTATTGRLITGAALILAVVAGAFVFSD---LVMMKYLAFGLLIALLLDATIIRM----FLVPAVMKLLGDDCWWAPRWMKRVQIDEGLRLKIYKDTEGYYTIGIAAVRGILRNAKLVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGT | |||||||||||||
5 | 2pffB | 0.09 | 0.06 | 0.70 | 0.54 | HHpred | -------------------------------------------------------------------------------YS-TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK----ILPEPTEDEPTTPAELVGKFLGYVSSLV-----------EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT----TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV--GEGNAQLVAIFGGQGN-TDDYFEELRDLYHVLVGDLIKFS----------AETLSELIRTTLEWLENP-----SNTPDKDYLLSITPSQGLVTAVAIAET-----DSWESFFKAITVLFFIGVRTSLPPSILEDSLENNEVPSPMLS---ISNLTQEQVQDYVNKTNSHLP | |||||||||||||
6 | 6bq1A | 0.07 | 0.06 | 0.84 | 0.58 | MRFsearch | ---------------GGGMMQCVIAVADKVFDAFLNMMADKAKTKENEEELERHAQFLLVNFNHIHKRIRRVADKYLSGLVDKFPHLLW----------SGTVLKTMLDILQTLSLSPYYDIYEARESIVKDFAARCGMILQEAMKWAPTVSHLQEYLNKHQPACVKKDYSNFMASLNLRNRYAFDLNKMMVQDLHSALDR---SHPQHYTQAMFKLTAMLISSKDCDPQLLHHLCWGPLRM--------------------FNEHGMETALACWEWLLAGKDGVEVPFMRPHYIWIDFLVQRFEI--------------DQVEIFS-----SLLQRSMSLNIGGAKGSMNRHVAAIGPRFKLLTLGLVPNATIRNVLREKIYSTAFDYFPKFPTQGEKRLREDISIMIKFWT | |||||||||||||
7 | 6v9iC | 0.08 | 0.08 | 0.94 | 0.90 | FFAS-3D | --FEDKWDFMRPLRQESVTKQQWFDLFSDVHAVCLWDD---KGPAKIHQALKEDILEFIKQAQARVLEWRKFFTQCDILPKP---FCQLEITLNVEDSIVRKLMLDTWNAMKLVHAERLGEAFD--SQLVIGVRESYVQIYRDNFEKA-YLDSTERFY--------RTQAPSYLQQNGVQNYM--KYADAKLKEEEKRALRYLETRREC--NSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMFSLMDKVPNGLEEHIISAGLADMVAAAETITTDSEKYVEQLLTLFNRFSKLVKEAFQDDPRFLTA-RDKAYKAVVNDKCPELLANYCDMLLRKTPLSKKLTSEEIEAKLKEVLLVLKNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWPADYVNKL-- | |||||||||||||
8 | 2jktA | 0.07 | 0.06 | 0.84 | 0.68 | SPARKS-K | GLALHCIANVGS-----------REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTLVPMGDWTSRVVHLLND----------------QH----LGVVTAATSLITTLAQKNPEEF--------KTSVSLAVSRLSRIVTSASTDLQ----DYTYYFVPAPWLSVKLLRLLQCYPPPVRGRLTECLETILNKAQEPPKQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVAMCDRSNAQQIVAEMLSYLETADYSIRELAEKYAVDY----------TWYVDTILNLIR-IAGDYVSE-EVWYRVIQIVINDDVQGYAAKTVFEAL-----------QAPACHENLVKVGGYILGEFG | |||||||||||||
9 | 5vchA | 0.09 | 0.08 | 0.87 | 1.01 | CNFpred | AQALSYVSSLIEEEINPQYAAKFASLIPSVVQVLDATIRE------GDTTNTKLIFNCLNDFLL--LDSQLTGNTIADLVKLALQIAVNSD-------VDEDIRVFAVQFVTSALVYRKSKINQ--AKLGPEITLAALKVASEEI-------DVEDELTNED-NTPALTALRLISNASGEL-SPSQVGVPIIEHLPTMLSSS----NPFERRSILLAISVLVTGSYTLSQFDKIIPATVTGLKDSEVQLAALKCIV-QLSTNLQDEVARYHEQYLPLVIDIIAKHVVIYKYATLALDGLLEFI---------------AHNDIIKY-----LDPLMNKLFQMLETQ--QSPKLRAAIVSAIGSCAFAAGFVPYFKTSVQYLFIQNVSQIE-GLSEDDIELKALTFENISTMGR | |||||||||||||
10 | 2vdcA | 0.05 | 0.04 | 0.70 | 0.67 | DEthreader | ELYIRMVNVNWMKAHETRMEHPFVMVRAGRT----------------A--PMVKMMLVP---------Q--AL--T------SSQTTP----DNHKALIQ-CN--VGGMDRGRPMGSETKGRLGEMIYRDRELKDHLATLKPWDKWVQNTTH----------GLHHFFRQN----------------------------------------------FSQVTNPPIDS-RERRVMSLKTESPVLTVGLDTHAIGLLKISK---TPGMSHSGEGGEDPGVTEYRLRHS-LIYDLKQINPDAKVTVKLADIRVNEVPDTTQRAIGTR----------QSLDYVGKGLSGGTIVVRPTTNTIIGNTVAGERFAVRNGCEYMTGGTAVILGRVG--VYDLDDSLPLYINDE------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |