>PF12825 (342 residues) GLTHVFGTIKDTPNIRDLPSNYQAVTEWARISLASTVFQQFVASDSASETFAGLKRIHGL MPYFMLKAALKISNPIGMIRSVLDLFLAQPFGGKSLLQRMFTSSLTEEVKQLQEEIEAVK DKVDDPIMCEKIQQFVYAPREIQEMFKADSVVEKMNIFLIILRSSEQPGLSKPQMIRLAR AHKAHAQYMKYRESLEDSDDDDGPQDEDAWLLEDLKILAFLYTRLRDREMLIDLIFEGFT AELLKDIITIFYSPLAQVYRAASIADSLNDLQNFINDLIRTVEQVEEMIQDNPHHTVQAF IDLIQRHEQSFYYFVHKVHSKGEGLFNSLMQWIEMFLTVVRE |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | GLTHVFGTIKDTPNIRDLPSNYQAVTEWARISLASTVFQQFVASDSASETFAGLKRIHGLMPYFMLKAALKISNPIGMIRSVLDLFLAQPFGGKSLLQRMFTSSLTEEVKQLQEEIEAVKDKVDDPIMCEKIQQFVYAPREIQEMFKADSVVEKMNIFLIILRSSEQPGLSKPQMIRLARAHKAHAQYMKYRESLEDSDDDDGPQDEDAWLLEDLKILAFLYTRLRDREMLIDLIFEGFTAELLKDIITIFYSPLAQVYRAASIADSLNDLQNFINDLIRTVEQVEEMIQDNPHHTVQAFIDLIQRHEQSFYYFVHKVHSKGEGLFNSLMQWIEMFLTVVRE | |||||||||||||||||||
1 | 6xnsA | 0.15 | 0.13 | 0.84 | 1.19 | FFAS-3D | -IKQLRDILSENPEDERVKDVIDLSER--SVRIVKTVIKIF-----EDSVRKLLKQIN-----KEAEELAKSPDPEDLKRAVLAEAVVRADPGSNLSKKALEIILRDALAAAARAASKVQQEQPGSNLAKAAQEIMRQASRAAEEAARRAKE-----TLEKAEKDGDPETALKAVETVVKVARALNQIATMAGS--------------EEAQERAARVASEAARLAER--VLELAEKPEVARRARELQEKVLDILLDI-----LEQILQTATKIIDDANKLLEKLRRSERKDP-KVVETYVELLKRHER---------------LVKQLLEIAKAHAEAVE- | |||||||||||||
2 | 4gmxC | 0.09 | 0.08 | 0.93 | 1.01 | CNFpred | FVVTVIKDLLDL--CVKKRKDNKAVVASDIMYVVGQYPRFLKA--HWNFLRTVILKLFEFMHEHEGVQDMACDTFIKIVQKCKYHFVIQQPESEPFIQTIIRDI-PQQVHTFYKACGIIISEESVAERNRLLSDLMQLPNMAWDTIVEQSTAN-ANIIKTNVAVCTSMGAFYPQLGHIYYMLQLYRAVSSMISAQVAAEGLIAT---KTPKVRGLRTIKKEIL-----KLVETYISKANLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHM----------IPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFA | |||||||||||||
3 | 4k1pA | 0.08 | 0.06 | 0.76 | 0.90 | DisCoVER | TLSNSI--RMLGSQSPLIQAYGLVILQQPIKVEMMRYSIRFN---YYSKLYELA---GN-INKADFTNAYGKL-QVQSIQENMEQDLNRFKTVLDKDSNNLSIKADEAIKTLQGDIVKLREDITILKG-SIN-IG----------KQ-VFTITTKTIDFVSIGTLSNEIVDSQTREAALRIQQKQ-----------------------KELLPLIQKLSQTEAEATQITFVEDQVSFTELIDRQITTLETLLTDWKVLNNNMQIQKNVETYT--SSLLQKHFNQIK--------KVSDEMNKQT----------NQ--FE-----D--YVTNVEV------- | |||||||||||||
4 | 4a01A | 0.06 | 0.04 | 0.73 | 0.83 | DEthreader | TTEARKGVG-----------AF--G-----------------SSMALFGRVGGGIYTK-AADVGADLVGK---NIPEDDPRNPAVI-AD----NVGDNVGDIAGMGSDLFGSYAESSCAALAMLYLIVSSVGILVCLLTTLFAKQLVIST-----VLMTIGVAVV-SFVALPTKSWQLFLCVAVGWA-IIPIFAIA----IFVSFTFAAMYGIAVAALGMLSTIATGLAIDAYGPIS--DNAGGIAEMAGMS-HR----------------------PYWFSAMTLVGSLVSGVQIAISASNTGGAWDNAKKYIEAGAARGPK------------------- | |||||||||||||
5 | 6v9iC | 0.05 | 0.05 | 1.00 | 0.54 | CEthreader | KWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQ-NGVQNYMKYADAKLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMIKRNEPNGIEPMLKDLEEHIISAGLADMVAAAETITTDSEKYVEQLLTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDKCP | |||||||||||||
6 | 6grjG | 0.09 | 0.07 | 0.72 | 0.75 | EigenThreader | NISNYFALQN--AIPAVLPKAQWLRQLSVIKEQATEYQRLSS------DTRLVIVNLNNNLITDSSNFQGI---------VVNLNSKVQGDNG-------VLAQLNGDIDKVNAAIDGAIAGIV--AGGLLVIGG--------AFVTAIGAVADFSTPVVIGGVAV-------------------------------------------AGAGGITAGAIVLHNSLGARQDLYQKRSSLNSE---------------VLIATQIGNGYKGLQVQAQNAVTAATQSNAWD-----SLTSDLGSLITDLDKGGDDIRQLWLTAADTTVKTVLTDVTTIKAQIAG | |||||||||||||
7 | 5hb1A | 0.10 | 0.08 | 0.77 | 0.35 | HHpred | -LVDIFAKALG-NCVDALEREVRKFINYGRVETIAAALAVACGQRN-------------------------------TENLARAAFIE--YGGQPRLE----------------------SVRLSSR-HDALALYLTR------LVRTL---WKAKVVQVGSGSDISSTIPTSKLVTIQENVERLRNFLEANKSTIQG--LAPPDIANQKEHQALHALQKLMESISEGISFVLMLFDERVS----DIYARLDAVSQQQLKDLTYEQLFSPGKELAKVLVKAIVNRNI----ASGANVETVADALRRRCGSFCSPLQRASEQAHN-SPVLRALLAESLRLFEQ | |||||||||||||
8 | 5frpA | 0.12 | 0.11 | 0.92 | 0.48 | MRFsearch | -LRLIFNKFLTYGLNVTSDCGYEVSLILCDTHLTKYYSEIIHEATNNSRLLTVVVKLHKLV-----LRLWET--VPELINAVIGFIYHELELFRKEATKLIGQILTSFVSTHSDTFKAWISKIADIEWTESIPQIIATREDISKELNQALAKTNKAIYTSLLHLARHKEVRELCINTMAKFYSNSLNEIERTYQ----------NKEIWEIIDTIPTLYNLYYILNINEQVDSVIFEYDNDKRVHRLLTVLFTSFFAFNARQ------IKISFAISKYIDFSKFLNNQESSDSTKAIDALETIKQFNDERIFYLLNACVTN-DIPFLTFKNCYNELVSKLQ- | |||||||||||||
9 | 2r02A2 | 0.14 | 0.12 | 0.88 | 1.11 | FFAS-3D | -----------------VPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLVPQSILTKSVIEQGGIQTVDQLIKELPELLQRNREILDES-LRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQA-------------------DGQVKECYQSHRDTIVLLELNAAIPSANPAKTMQGSEV--VNVLKSLLNLDEVKKEREGLENDLKFDMTSKFLTALAALSVTELDRVYGGLKVQESLKKQEGLLKNIQVSHQEFSKMKQSN--NEANLREEVLKNLATAYDNFLVANLKEGTKFYNELTEILVRFQNKCSD | |||||||||||||
10 | 5h7cA | 0.14 | 0.13 | 0.92 | 0.82 | SPARKS-K | EQQNAFYEILHLPNLNE--EQRNAFIQSLKDQAVKQLAEKAKEATDKEEVIEIVKELAELAKVNEIVKQLAEVAKLVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEYIVKILAELAKQSTDSELVNEIVKQLEEDKELVEHIEKILEELEQQSAYEILSL---PNLNEEQRNAFIQSLKDNQAVKQLAEKAKEATD-------KEEVIEIVKELAELAKQNEIVKQLAEVAKEATD----KELVIYIVKILAELAKQSD--------SELVNEIVKQLAEVAKEATDKVIYIVKILAELAKQLVNEIVKQLEEVAKEATD--KELVEHIEKILEELKK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |