>PF12813 (241 residues) PAFLVPAVLDALRGSKYGPITEVMGGEADGYCAVHVRKSGGLVLTSDSDLLVHDLGENGG VIFFTDIDLDSENSKLVAPQFRHAEICRKLSIKPDVGFSYMAFEISADPHLTLEQAAERS RRGEAVMYSREEYDSFIKTYLLPETAPKTVATCGLQLDPRISELVLRYLQITTTASKEKD ASLEMFLPFLLDCPSRTSAWEVSKPIRKLAYSLLQSGQKTSLKTVSEMRRLQTLSSGSQV D |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | PAFLVPAVLDALRGSKYGPITEVMGGEADGYCAVHVRKSGGLVLTSDSDLLVHDLGENGGVIFFTDIDLDSENSKLVAPQFRHAEICRKLSIKPDVGFSYMAFEISADPHLTLEQAAERSRRGEAVMYSREEYDSFIKTYLLPETAPKTVATCGLQLDPRISELVLRYLQITTTASKEKDASLEMFLPFLLDCPSRTSAWEVSKPIRKLAYSLLQSGQKTSLKTVSEMRRLQTLSSGSQVD | |||||||||||||||||||
1 | 1ul1Z | 0.12 | 0.10 | 0.85 | 1.25 | HHpred | TKQHNDECKHLLSLM--GIPYLDAPSEAEASCAALVKAGKVAAATEDMDCLTFGSP---VLMRH--LTASE-AKKLPIQEFHLSRILQELGLNQE-QFVDLCILLGSDYCESIRRAVDLIQ-----------------KHKSIEEIVRLDPNKY-PVPENWHKEAHQLFLEPEV--LDPESVELKWSEPNEEEMCGESEERIRSGVKRLSK----SRQGSTQGRLDDFFKVTGSLSSAK-- | |||||||||||||
2 | 4wa8A | 0.14 | 0.12 | 0.83 | 1.01 | CNFpred | DESLVEDAKRLLDLMG--IPWVQAPSEGEAQCAYMARCGVWATGSQDYDSLLFGS--PRLVRNITIVGKRKEIIEVKPEIMRLEDVLDQLGLESREQLVDLAILLGTDY---NPDGVPGIG--------PKRALQLIRKYGSLDELKDTDIWPKI--PEKLRRLFLEPEVTDDYELDWDEPDEEGLVEFLVEE--RDFSEDRVRRAVERLKEALQELRK---------------------- | |||||||||||||
3 | 2izoA | 0.09 | 0.06 | 0.66 | 0.80 | DisCoVER | GLEEGVIPIYVFMVEESKLLRAMGISEGEAEAAYLNKLLSWAAASQDYDAILFGA---KRLVRN-LTIY----VEIKPELIETEILLKKLGI----TREQLIDIGILIGTIGPERALKIIK---YGKIIDEIRGLFL-NPQVV-KPE------A--LDLNEPN---------------GEDIILVLTAIK-------EAK-GA--S--RQT------------------------------ | |||||||||||||
4 | 6rc9A | 0.06 | 0.05 | 0.77 | 0.67 | DEthreader | --TYTSFSSLVVPRVYYEQL----------------RHPEEAANGNLFGGNGHTKSHTAPLSIGVFRV---------VTGW---PYALLFSFNYGNAPNSLFAAI--L-PELLFSPTLSR--F--STGFNLVGLLRALFLRSIPLIT-GLA-WT--QDVGQGGWLTGLDASD-QRALIWAPRPWAFRGSWVN---LGRVE------SV--WD--LKGVWADQPQSLKTTPVFNGLSNAKMN | |||||||||||||
5 | 4wa8A | 0.12 | 0.10 | 0.85 | 0.72 | CEthreader | DESLVEDAKRLLDLMGI--PWVQAPSEGEAQCAYMARCGVWATGSQDYDSLLFGSPRLVRNITIVGKRKHPHTGEIIEVIMRLEDVLDQLGLESREQLVDLAILLDGVPGIGPKRALQLIRKYGSLDELKDTDIWPKIERHLPVE----------------PEKLRRLFLEPEVTDDYELDWDEPDEEGLVEFLVEERDFSEDRVRRAVERLKEALQELRKGG------------------ | |||||||||||||
6 | 4wa8A | 0.10 | 0.07 | 0.78 | 0.70 | EigenThreader | KLDESLVEDAKRLLDLMGIPWVQAPSEGEAQCAYMARCGDVATGSQDYDSLLF---GSPRLVRNITIVKHPHTGEIIEVKMRLEDVLDQLGLESREQLVDLAILLGGVPGIGPKRALQLIRKYGSLPVEPEKLRRLFLEPEVTDDYEL---DWDEPDEEGLVEFLV-------------------------EERDFSEDRVRRAVERLKEALQELRKGG---------------------- | |||||||||||||
7 | 6vbhA2 | 0.15 | 0.07 | 0.51 | 1.22 | HHpred | NGQMFLESQELLRLF--GIPYIQAPMEAEAQCAILDLTDTSGTITDDSDIWLFGAR-----HVYRNFFNKN--K--FVEYYQYVDFHNQLGLVDD-------------SKGS-------FLW---GKPDLDKIREFCQRYFGWNRTKTSLFPVLKQLD----------------------------------------------------------------------------------- | |||||||||||||
8 | 6vbhA | 0.15 | 0.11 | 0.73 | 0.65 | MRFsearch | --QMFLESQELLRLF--GIPYIQAPMEAEAQCAILDLTDTSGTITDDSDIWLFG---ARHVYRNF------FNKNKFVEYYQYVDFHNQLGLDRN-KLINLAYLLGSFPGHGLEPLLKFSEWWHEAQKNDTKVKKKLRTLQLTPGFPNPAVAEAYLDLDKIREFCQRYFGW--------------------------NRTKTDESLFPVLKQLDAQ------------------------- | |||||||||||||
9 | 6vbhA2 | 0.13 | 0.07 | 0.53 | 0.77 | FFAS-3D | NGQMFLESQELLRL--FGIPYIQAPMEAEAQCAILDLTDQTGTITDDSDIWLFGAR-----HVYRNFFNKNKF----VEYYQYVDFHNQLGLVDDSKG---SFLWGKPDLDKIREFCQRYFGWNRTK-TDESLFPVLKQLDAQ-------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 6tusA | 0.10 | 0.08 | 0.84 | 0.67 | SPARKS-K | TGQMFLESQELLRLFGIP--YIQAPMEAEAQCAILDLTQTSGTITDDSAIWLFGAR-----HVYRNFFNKNK----FVEYYQYVDFHNQLGLDR-NKLINLAYLLGSDYTEGIVTAMEILNEFPG--HGLEPLLKFSEWWHEAQ---TKVKKKLRTLQLFPNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDA---------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |