>PF12784 (228 residues) PYTDFGFKKLFGTEMNKDLLISFINSLLSGKEVVKDLTYLNTEHLGTSEADRKAVFDVYC ENENGEKILVEMQRGEQQFFKDRSLYYATFPIREQGQKGEWNYRLKAVYVIGILNFTFDE QSNDYYHHEVKLIDTRTKEVFYDKLTFIYLEMPKFNKKEEELNDMFEKWLFVLRNLSRLL ERPKALQERIFTKLFEAAEVAKFTKAEYDSYEESLKVYRDWINTIETA |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
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Seq | PYTDFGFKKLFGTEMNKDLLISFINSLLSGKEVVKDLTYLNTEHLGTSEADRKAVFDVYCENENGEKILVEMQRGEQQFFKDRSLYYATFPIREQGQKGEWNYRLKAVYVIGILNFTFDEQSNDYYHHEVKLIDTRTKEVFYDKLTFIYLEMPKFNKKEEELNDMFEKWLFVLRNLSRLLERPKALQERIFTKLFEAAEVAKFTKAEYDSYEESLKVYRDWINTIETA | |||||||||||||||||||
1 | 5gkeA2 | 0.10 | 0.05 | 0.49 | 0.97 | DisCoVER | TGSEAEMAELIF-----ENPE-V---IE-----PG-FKPLFREKAIG----TGIVAVLGRDS-DGNIVVLELKRRRA--ELHAVRQLKSYVEILREEYGD------KVRGILVAPS-L-----------TSG-----AKRLLEKEGLEFRKL--------------------E------------------------P--P-K------------------------- | |||||||||||||
2 | 3hfwA | 0.06 | 0.05 | 0.84 | 0.83 | DEthreader | KAAMVLSAAGDAYNGWEFL--G--------------SDDTVMLAEAEATQLLLAHY-PGGASNSHEGGAAAMGLFPHSQLDTLIQVSIESGR-MT---------HHHPGYGASFTYANR--LQWGKLMLLPAKK---YIVQSVNLWFQWYL-IGSAPTFPEFRFYDMIAYDAVLAGDSWK-EL-HRAFFHG-SDTAAGVNYEKLRNRLEETARALYSLGSK-DTVISL | |||||||||||||
3 | 2ewfA3 | 0.10 | 0.09 | 0.89 | 0.90 | CEthreader | EKKNVIEEKIKARFIANKNTVFEWLTWNGFIILGNALEYKNNFVIDEELQPVTHAPDMEIIYED-FIVLGEVTTSKGATQFKMESEPVTRHYLNKKKELEKQGVEKELYCLFIAPEINKNTFEEFMKYN-----------IVQNTRIIPLS--------------LKQFNMLLMVQKKLIEKGRRLSSYDIKNLMVSLYRTTIECERKYTQIKAGLEETLNNWVVDKE | |||||||||||||
4 | 4hn3A | 0.02 | 0.01 | 0.79 | 0.62 | EigenThreader | GLVVSNILESGLR---------VSQNKYSPDNYLFQEGQYWLDRKSDKNPNGLNHILEQDYLKDTGGISIALAISDSELLAQGKETVLNRIR------QTKGLENVPVTIAIYKQG-ARDAVAPGNYIAYATAN---GDSLSNWKDIDEKNP---STESAKDHKTDNDNFLNFKKAIEDYYPNFIIGFTQYVTDLVGQHI---------------------------P | |||||||||||||
5 | 5gkeA2 | 0.12 | 0.06 | 0.49 | 0.37 | HHpred | ----------LALTGSEAEMAELIFENPEIEPGFKPL---FREKA-----IGTGIVAVLGRDSDGNIVVLELKRRAELHAVRQLKSYVEILREEY---------GDKVRGILVAPS-LTSG-AKRLLE---------------KEGLEFRKLEPPK------------------------------------------------------------------------ | |||||||||||||
6 | 2ewfA | 0.13 | 0.11 | 0.85 | 0.72 | MRFsearch | --KKKKLQADFNDPRQLEEVIDLLEVYHENALEYKNNFVIDEELQPVTHA-AGNQPDMEIIYE-DFIVLGEVTTSQFKMESEPVTRHYLNKKKELEKQGV----EKELYCLFIAPEI-----NKNTFEEFMKYN------IVQNTRIIPLSL--------------KQFNMLLMVQKKLIEKGRRLSSYDIKNLMVSLYRTTIERKYTQIKAGLEETLNNWVVDKEV- | |||||||||||||
7 | 2p14A | 0.13 | 0.10 | 0.78 | 0.74 | FFAS-3D | -MQDILYEEVEKTINPPNYFEWNTYRVFSYKNLVPNFKLDDSGHPIGNAIPGVE--DILVEYEH-FSILIECSLTIGEKQLDYEGDSVVRHLQEYKKKG------IEAYTLFLGK-------------SIDLSFARHIGFNKESEPVIPLT--------------VDQFKKLVTQLKGDGEH---FNPNKLKEILIKLLRSDLGYDQAEEWLTFIEYN---------- | |||||||||||||
8 | 3s1sA | 0.09 | 0.08 | 0.88 | 0.77 | SPARKS-K | VFSYLPSYGDDEVSVYHPICEAALNQALVNTGLDSTYEVVHHELVG------SIEADFVIKNTKKYLLIVEVKRT-KSQVSSTRYRLQAQSYVREANIKV-----EQHYYCLTNLE---------IIDFFKH-DPNKPVVSQQIIEPSPIVVGNFSDTVSEFYNRLVEAFQNIIDIDAGTYK------SSTANLVDILENRKDNSTSWHQALVVAGYEYIRGVLRGQN | |||||||||||||
9 | 5mznA | 0.09 | 0.07 | 0.79 | 0.69 | CNFpred | --YQKVMKPLLL----LESWQGLCSSRDREDYKPFSIIVGNRTAV-----SDFYDVYASVAKQ-SESDLIVMAYLPDFRPDKR---LSSDDFKKA----------QHTCLAKVRTLKN----GGNVDVTLRIHRNHFSKFLTLRSEIYCVKVMQM--------TTIEREYSTLEGLEYY---------DLVGQILQAK-PVNVDAAEIETVKKSYKLNTSQAEAIVNS | |||||||||||||
10 | 3hfwA | 0.05 | 0.04 | 0.84 | 0.83 | DEthreader | YAAMVLSAADAGYNGWEFL------------------SDDVMATEAVEAGQLLLHYCPGGASNSHEGGAAAMCGLPHHQLDTLIQVSIESGR-MT---------HHHPGYGASFTYAN-R-LQGKGLMLPAKKY----IVQGVENLWFQWL-IGSAPTFPEFRFYDMIAYDAVLAGDSWKELAHRAFFHGGDSDTAAGVSNYEKLEYRNRLEETARALYSLGSKED-- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |