>PF12768 (209 residues) LATYDTKSQSWTAALGASAIPGPVTALTAANSDASQLWVAGTATNGSTFLMKFDGTTWNS VGDTLGSGTKIHGLQVLPLTEDHDSSDLISASQALMITGSLNLPGFGNASAVLFNGTSFQ PFALTSSSSNTGGSLSQIFSQRQNFFNTPGGKLAKGFVVLIALAIALGLIFFLVIAGVVA ERIRRKREGYVPAPTASFDRSQGLSRVPP |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | LATYDTKSQSWTAALGASAIPGPVTALTAANSDASQLWVAGTATNGSTFLMKFDGTTWNSVGDTLGSGTKIHGLQVLPLTEDHDSSDLISASQALMITGSLNLPGFGNASAVLFNGTSFQPFALTSSSSNTGGSLSQIFSQRQNFFNTPGGKLAKGFVVLIALAIALGLIFFLVIAGVVAERIRRKREGYVPAPTASFDRSQGLSRVPP | |||||||||||||||||||
1 | 5efvA | 0.08 | 0.07 | 0.87 | 1.00 | DEthreader | -----PQEPEFITDLSP-YTNAVMQSFWVDPRTK-IIYMTQARPGNHYMLSRLKGQFIDRLL--VKNGGHGTHNAYRYI-----------DGELWIYSA-VLDSNKNNKFVRFQYRTIEMQDVMPNIFNDRYTSAFVRSADD-YDAYKAGQRGVNQFLKNIA-PQVSMTDKEVGDVQVLFERWNFCKIVPGNTFGTG-GV--GKWSL-- | |||||||||||||
2 | 6p2mA1 | 0.07 | 0.05 | 0.68 | 0.67 | DisCoVER | ------------WKNVVIGGGGYVTGIIYHPNQSGLVYARTDI----GGAYRWDSSQWIPITSDY---MGILSIAID-------PNDVN----RVYMLCGKYTSWAGTGAVLASTKGATWTIYPLSVK----IGGNERGPHWITDIKIDPFKAMFVTGYG--------------------------------IWACDNLSAPTTWYFR- | |||||||||||||
3 | 5c2vA | 0.10 | 0.07 | 0.69 | 0.83 | DEthreader | -------LFTQSDPYQNYPHYIFAQIPIYYAGSTGMIIFSGSPEPYAYNLYRLDQGTTIDQTYNLSS-N-F-DPWLTP-------------DGNILFSSVQANGRAGRVMICVDNWAYPRPIYGNGGT--SGRSAKKIVPLPDYVKYK---------------------P-AYLRPYHGRI-CS-------------SYRGRAFK---- | |||||||||||||
4 | 5ifeA3 | 0.08 | 0.07 | 0.79 | 0.39 | CEthreader | VACGRGPRSSLRVLQVAFPLQYTPRKFVIHPE-SNNLIIIETDHNAASVIRVMNPIQGNTLDLVLEQNEAAFSVAVCRFSNT-------GEDWYVLVGVAKDLILVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIAN----------------------------------- | |||||||||||||
5 | 5jwzA1 | 0.09 | 0.07 | 0.82 | 0.62 | EigenThreader | VLYLGAGNGLWRSTDAGVSWNQGIVWVTFDERSGATIYVGVAD-KENTVYRSTGGATWSRIPGQPTG-YLAHKGVLDS------------ATGHLYLTLSDGPYDGGKGRIWRYDSGAWQDVSPVAEADAYYGFSGLSVDRQKPGTLATDSGATWPWLSW------------------------GASPAPPETAPKLGWTEALEIDPFD | |||||||||||||
6 | 5jwzA | 0.13 | 0.08 | 0.65 | 0.41 | HHpred | FYVSTDGGATFTAEAT--GLPAGNVRFQALPGTEGDIWLAGGSDTGAYGLWRSTGATFTKSAG-V---EQADSVGFGKAAP-------GASYRTVFVSAKIG----GVRGIFRSTGASWTRIND-----DAHQGWAAITGDPRVY---GRVYVSRGIQVG------------------------------------------------- | |||||||||||||
7 | 5jwzA | 0.09 | 0.05 | 0.58 | 0.37 | MRFsearch | --VSTDGGATFTAEATG-LPAEGNVRFQALPGTEGDIWLAGGSDTGAYGLWRSTDATFTKSAG----VEQADSVGFGKAA-------PGASYRTVFVSAKIGG----VRGIFRSTDASWTRINDDA---HQWGWTGAAITGD------------------------------------------------------------------- | |||||||||||||
8 | 6htnA | 0.13 | 0.07 | 0.53 | 0.53 | FFAS-3D | LLERCWDSNKWYDGANQFSAISGAGATSWLDSSGQHIRVYAIGTDGKIIELCWDKDKWYSGALTGQFYGASTPDATSWLDKN--------GQIHIRV---YAYNQDNVQKEYCWDGSKWYV---------------------------------------------------------------------------------------- | |||||||||||||
9 | 5fkqA | 0.15 | 0.11 | 0.69 | 0.72 | SPARKS-K | TFYVSTNKASFSATVTAG-IPAAARKFKAVYGREGDIWLAGGSSTTTYGLWRSTGASFTKLA-------SVQEADNVTFGKAATGAT----YPAIYIIGKVD----NVRGVFRSTGASWVRI---NDDQRQYGNFGEAISGDPRIY---------GRLYLGTNGRGLLYGDSA------------------------------------ | |||||||||||||
10 | 6eojA | 0.15 | 0.11 | 0.76 | 0.95 | CNFpred | VLVRDIQDNSVIPVA-FLDIPVFVTDSKSFG----NLLIIGDAM-QGFQFIGFDAYRMISLGRSMS-KFQTMSLEFLVNG----------GDMYFAATDAD-----RNVHVLKYAGQRLVHCSSFTLH----STNSCMMLLPRNEEFGSPQV-PSFQNVGGQVDGSVFKIVPLSEKYRRLYVIQQQ----------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |