>PF12725 (323 residues) YANTIYPVLSRGVNRVTSLVPFSVMEALIVLLCAGAVFYMIFFIAKIIHNRGKRRKIFSL FAINLICIASVLYFVFVVSCGINYYRYPFAQTCGLEIRPSSKAELTALCTDLADRANELR KGVQTDRNSVMRLNTEDIETTAKKARTAFDAVSGDYPLLRAGYGPPKPVFFSRLMSYCDT TGIFFPFTFEANVNVDIPDYSIPLTMCHELSHLRGYMREDEANFIGYLACEKSGDADFRY SGTMLAYIYASNALYGTDPSAANQIYGTLSDGVRRDLENNSAYWKQFEGPVATAAEHVND SYLKANKQTDGIKSYGRMVDLLL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | YANTIYPVLSRGVNRVTSLVPFSVMEALIVLLCAGAVFYMIFFIAKIIHNRGKRRKIFSLFAINLICIASVLYFVFVVSCGINYYRYPFAQTCGLEIRPSSKAELTALCTDLADRANELRKGVQTDRNSVMRLNTEDIETTAKKARTAFDAVSGDYPLLRAGYGPPKPVFFSRLMSYCDTTGIFFPFTFEANVNVDIPDYSIPLTMCHELSHLRGYMREDEANFIGYLACEKSGDADFRYSGTMLAYIYASNALYGTDPSAANQIYGTLSDGVRRDLENNSAYWKQFEGPVATAAEHVNDSYLKANKQTDGIKSYGRMVDLLL | |||||||||||||||||||
1 | 3sksA | 0.06 | 0.06 | 0.98 | 1.03 | EigenThreader | GKQLFALAECDLKT-----YSDEVVKDLQLENKLSSQYTQLLASLIPFMQGKERSERKAASEAYYGFLAENDELVKVRTKIAKSLGFKNYARMYRTDYNNYRQQVLDYIVPVTTELRKRQQARIFEFPTGNPTPKGDADWIVNHGKTMYKELSETDEFFNFMLDNDLLDLVAKKGKAGGGYCTYNY--KAPFIGTSGDIDVLTHEAGHAFQVYESWPTYEACEIHSMSMEFFTYYFSHLSSALLFLPYGVSVDEYQHYVYENEKKYLPHSPFYYIDYTLAQICALQFWKRARDNEAWEDYVNLCQQGGFLELVEVASVITEIE | |||||||||||||
2 | 3rkoB | 0.08 | 0.07 | 0.87 | 1.01 | CNFpred | ---------------IGFNLVLDGLSLTMLSVVTGVGFLIHMYASWYMRGEEGYSRFFAYTNLFIASMVVLVLALLLMYLGWEGVGLCSYLLIGFYY---TDPKNGAAAMKAFVVTRVGDVFLA-----------FALFILYNELTLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQLPLQTWLADAM------AGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAAL---VQTDIKRVLAYSTMSQIGYMFLALGVQ-AWDAAIFHLMTHAFFKAL----LFLASGSVILACH | |||||||||||||
3 | 6sarA1 | 0.09 | 0.04 | 0.47 | 0.59 | DisCoVER | -----SIGQEMQMGDYVRQLAPL--I----------------------------------------------------------------------------------------------------------NDPLLTQYINSLGMRLVSHA-----NSVKTPFHFFLINND-----EINAF-AFFGGNVVLHSALFNESQLASVMAHEISHVTQFTQEQEADRIGIQVLQRSG---F--DP-QAM--PTFLE-----------------------------DQARYSSRPP--EILLT--------HPLPESRLADARNRA- | |||||||||||||
4 | 3o0yA | 0.09 | 0.07 | 0.69 | 0.83 | DEthreader | -----------YG---------RVMQNDQPIDYIVRLGQFDKLAA---------------V-----------------------Q--D----------QIGLDEVARISGVMNEILLAQGYRMALNEEPRFLYEGELLSDINGYITEVTAKMAPVFRTTPSYQVEVKSFPVEVQ-DGAPGGQYTSPAPGIYWINLRDANPGLKTLTYHEAGHHWQIYTEGWALYSEQVAYEGMEDPFGDLGRLQAELFRAVRLVVDTG---------------SEQTGTAESDVV-AEIE-RYM-AW--P--------G-QALGYKLGMLKLS | |||||||||||||
5 | 3bkkA2 | 0.07 | 0.07 | 1.00 | 0.57 | CEthreader | YEDLLWAWEGWRDKAGRAILQFYPKYVELINQAARLNGYVDAGDSWRSMYETPSLEQDLERLFQELQPLYLNLHAYVRRALHRHYGAQHINLEGPIPAHLLGNMWAQTWSNIYDLVVPFPSAPSMDTTEAMLKQGWTPRRMFKEADDFFTSLGLLPVPPEFWQKSMLEKPTDGREVVCHASAWDFYNGKDFRIKQCTVNLEDLVVAHHEMGHIQYGANPGFHEAIGDVLALSVSTEHDINFLMKMALDKIAFIPFSYLVDQWRWRVFDGSITKENYNQEWWSLRLKYQGLCPPVPRTGDFDPGAKFHIPSSVPYIRYFVSFII | |||||||||||||
6 | 1pw4A | 0.06 | 0.05 | 0.75 | 0.95 | EigenThreader | NPRVFLPAGLILAAAVMLFMGFVLCGWFQGMG------WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGAFCAILVALFAFAMMRDT----PQSCPNKLLWYIAIANVFVYLLRYGILDWSP------TYLKEVKH------------------------FALDKSSWAYFLYEYAGIP------------------GTLLCGWMSDKV----FRGNGVFFMTLVTIATIVYWMIVIGFLIYGPVMLIGLHALELAGTAAGFTGLFGYLGGSVAA-------------------SAIVGYTVDFFGWIGGSILAVILLIVV | |||||||||||||
7 | 3o0yA | 0.12 | 0.11 | 0.91 | 0.38 | HHpred | ----FDKLAATIIEKQTNLPSKVTLQGAIKYLKGFTSGPFVNVFREKIEKQQSLITQVIAKVSQVVYPAYQSVEKASEQLGSVYYQDAIKQLGD---SELSPTQIHQIGLDEVARISGILLAQGYTTEPRFLYEDSIREELLSDINGYITEVTAKMAPTPSYQVEVKS--FPVEVQDGAPGGQYTSPAVDGWINLRNPKFGLKTLTYHEANHHIALNLDQALPFLRRI---------APYNAYTEGWALVAYELGMNDPFGLGRLQAEVDTGLHDTREQAISYMSEQTGTAESDVVAEIERYMAWPGQAL---GYK------- | |||||||||||||
8 | 1u6gC | 0.08 | 0.07 | 0.85 | 0.40 | MRFsearch | --VKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIKIDALSCLYVILCNPQVFHPHVQALVPPVVACVKITSEALLVTQQLVKVIRPLDQP----SSFDATPYIKDLFTCTIKRLKAA----------------DIDQEVKERAISCMGQIICNLG---------LPNTLQIFLERLKN-------------------EITRLTTVKALTLIAGLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLIQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRQGGALSAMLDFFQALV | |||||||||||||
9 | 3sksA2 | 0.06 | 0.06 | 0.89 | 0.78 | FFAS-3D | -----ENKLSSQYTQLLASAKITLSQLIPFMQGKEERKAASEAYYGFLAENEEELDRIYDELVKVRTKIAKS------LGFKNFVELGYAR---MYRTDYNAEMVANYRQQVLDYIVPVTTELRKRQPTGNPTPKGDADWIVNHGKTMYKELSAET---------------DEFFNFMLDNDLLDLVAKKGKAGGGNGTSGDIDVLTHEAGHYNWPTYEIHSMSMEFFTWFEEDADKYYFSHLSSALLFLPYGVS--VDEYQHYVYENPEASPEERKTAWRNIEKKYLPHSPFCALQFWKRARD--NRQEAWEDYVNLCQ--- | |||||||||||||
10 | 5k7vA | 0.12 | 0.09 | 0.76 | 0.83 | SPARKS-K | ----------------------------IEEVVAEMIDILAESSKKSIEELARAADEAIEEIARLATAAIQLIEALAK---------------NLASEEFMARAISAIAELAKKAIEAIYRLADNHTT--DTFMARAIAAIANLAVTAILAIAALASNHT-----------TEEFMARAISAIAELAAIEAIYNHTTDKFMAAAIEAIALLATLAIAIALLAS--------NHTTMAKAISAIAELAKKAIEAIYRLSPTYIEKAIEAIEKIARKAIKAIEMLAKNITTAIDEIREKAKEAIKRLEDNRT------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |