>PF12699 (342 residues) RNDAICDEMAALENLFITLEGSDPTLINYALEKYNLTEVVSNEDVNRAAIQAWERVKVNL RRFQSDLFGYAKVIQSGSERLVERLEMLQGIAEKANKVPFKDEITVKKNQKFAINGGFQP FDIRPVLEDTNNTFDFYDKVLLPYMKQIGKLLDTVELNLTWTENTEMRFELLNANKWMKN FKPLEEPDDRFRAAAYVVRGITAQGERAIYYSGPEDTKTENVKDWGYFISTIRNMRYRYL KIPGQQPLNESDNKIDVENATTIRQRLSYLIGIAKRIQGRKGYDQKISTELRKIERSADK VRNNTRNMRTQLDQRNVEEERDEGRPNVSNIVKDMSTILNCM |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | RNDAICDEMAALENLFITLEGSDPTLINYALEKYNLTEVVSNEDVNRAAIQAWERVKVNLRRFQSDLFGYAKVIQSGSERLVERLEMLQGIAEKANKVPFKDEITVKKNQKFAINGGFQPFDIRPVLEDTNNTFDFYDKVLLPYMKQIGKLLDTVELNLTWTENTEMRFELLNANKWMKNFKPLEEPDDRFRAAAYVVRGITAQGERAIYYSGPEDTKTENVKDWGYFISTIRNMRYRYLKIPGQQPLNESDNKIDVENATTIRQRLSYLIGIAKRIQGRKGYDQKISTELRKIERSADKVRNNTRNMRTQLDQRNVEEERDEGRPNVSNIVKDMSTILNCM | |||||||||||||||||||
1 | 3vk9A | 0.07 | 0.04 | 0.58 | 0.58 | DisCoVER | ----TI-DL--YY-VP--G------SAPCRA-VL-LTAKALNLNLN--LK-LV-DLHHGE--QLKPYLKL---NPQ----HT--V--PT--L--V----------------------------------------DDGLSIWESRAIITYLVNAKGSSLYPDPKARALV--DQRLYFDIG---------TLYQRFSDYFYPQVF-AGAPADKAK----NEKV--QEALQLLDKFLKY-VA-GP----------NL-TVAD--LS-LIASVSSLEAS-----DI--DFKKYA-NVKRWYETVKS-----------------------TAPGYQEANKGLEAF- | |||||||||||||
2 | 6t58A | 0.07 | 0.05 | 0.73 | 0.67 | DEthreader | NPSQAMVFHYSKLELKELLTRELPSFLGRTDAFQKLMSNLECVFLSCIAMC-ACPLEK--------------------------------ALDVMVSTFHKLLLLLPSFLGK--KLNLV-FYCVFLSCIAM-NEFEG-SA--FLTNRSNRI-LLLETVILGLK--AQYDASELKASMDEDSLIE----ICSRTNQELEINRYKDLEVALAK-----GRRAEDSVPQCIQNKPLYFADRLYD---SMKGK---GTRDKVLIRIMVSRSE-VD-------------------MLKIRSEFKRYKSLYYYIQQ-D-------T--KGDYQ-KALLYLCGGD-D-- | |||||||||||||
3 | 2xm6A | 0.08 | 0.08 | 1.00 | 0.57 | CEthreader | AAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRN | |||||||||||||
4 | 5h5mA | 0.08 | 0.07 | 0.89 | 0.70 | EigenThreader | -GDLINEIDTFQNRI------------------EIDPAHYRRGTDRPDLEG----------HCERIVSGSASIADNRKQKIVAECNNLRQALQELLTEYEKS-----TGR-----RDDIPLGIAEVHKRTKDLRRHLRRAIVDHISDAFPLILLIEAAKEGHEENTRYRSKMFQEHANEIVSVARLSCQLSPQVAQAAILLCHQPTSTYKNAWFDKVRLLTTALDNIFLAVSEAHIVEDCERGIKGITACETVDCAAGSIRGRALRVCDVVDAEMDFLQNSEYTETVKQAVRILKTQRVDQFAERASALANRQEAHGLTWFINACTLVHDAVKDIRHALLMN | |||||||||||||
5 | 6sl2A | 0.16 | 0.13 | 0.82 | 0.38 | HHpred | ---------VELCALLEIIGIKCTENLDKALRDVKLT-GIGPTDIVKQGLLLWCQKKCEIHRHRPDLLDWETVGED----DRANLEKAFDVAEK----------------ELGIPKLLDVDDIRSVMTYVAALYKVFSSNDEKAGKRAGNFLDLLR----ATEGMVHDYEQRAL-ENIEAAINKM-NGVEP-SD-E-YHQVKEQINTKNYRKGD-RAFIKEQGDLATLFGQIN--SLRGMKRPVYVAPE--G-----LDPKSLEGYIANISEAE------RALRSKLNTAMRNCLALRKAFADPANATDAKINEYVTDE-TSEAPLQVEAQLPPIEEA---- | |||||||||||||
6 | 1sjjA | 0.11 | 0.09 | 0.79 | 0.50 | MRFsearch | --SEIKALLKKHEAFESDLAAHQDRVEQQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIAKRAAPFNNWMEGAMEDLQDTFIVHTIEE----------------IQGLTTAHEQDADKERQAILGIHNEVSKIVQTYHINGKWEHVLRKQFGAQVIGPWIQTK-------------MEEIGRIS----------------IEMHGTLEDQLNHLRQYEKSI---------------------VNYKPKIDQLEGDHQQIQEALFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAK---GISQEQMNEFRASFNHF | |||||||||||||
7 | 6m3pA | 0.08 | 0.06 | 0.75 | 0.85 | FFAS-3D | --QSAVSMLKKHQILEQAVEDYAETVLSKTSRALVADSHPESERISMRQSKVYAGLKDLAEERRGKLDERHRLFQ-LNREVDDLEQWIAEREVVAGSHELGQDYE----------------HVTMLQERFREFARDTGNIGQERVDTVNNMADELINGHSDAATIAEWKDGLNEA-------------------------------------------------WADLLELIDTRT------------------QILAASYELHKFYHDAKEIFGRIQDEENTVETLQRMHTTFEHDIQALGTQVRQLQEDAAR-LQAAYAGDKADDIQKRENEVLEAWKSL | |||||||||||||
8 | 5k7vA | 0.10 | 0.08 | 0.78 | 0.64 | SPARKS-K | -------IEEVVAEMIDILAESSKKSIEELARAADNKT--TEKAVAEAIEEIARLATAAIQLIEALAEFMARAISAIAELAKKAIEAIYRLADNHTT-----------------------------DTFMARAIAAIANLAVTAILAIAALASNHTTEEFMARSAIAELAKKAIEAIYRLADNHT-----------------------------------TDKFMAAAIEAIALLATLAILAIALLASNHTTEEFMAKAISAIAELAKKAIEAIYRLADNHTSPTYIEKAIEAIEKIARKAIKAIEMLAKNI---TTEEYKEKAKSAIDEIREKAKEAIKRL | |||||||||||||
9 | 4k1pA | 0.10 | 0.08 | 0.81 | 0.82 | CNFpred | SLTNHQKFAKANVREWIDE--YNPKLIDLNQEMMRYSI--RFNSYYSKLYELAGNIEQSKADFTNAYGKLQLQVQSIQENMEQDLLELNRFKTVLDK------------------------DSNNLSIKADEAIKTLQGDIVKLREDIKRIQGEIQA---------------ELTTILNRPQ-------IIKGSINIGKQVFTIKTIDFVSIGTLSNEIVNASQTREAALRIQQKQKELLPL---------IQKLSEAEATQITFVEDQVSSFTELIDRQITTLETLLTDWKVLNNNMIQIQKNVEEGTYTDSSLLQK------FNQIKKVSDEMNKQTNQF | |||||||||||||
10 | 6r9tA | 0.08 | 0.06 | 0.76 | 0.67 | DEthreader | D-K-RKKMDESKHEIHSQVDAIT------------ALSGRPLLQAAKGLAGAVSELLLQAAGNA--ASAAALVLKAKSVAQRT-------------------------------------------SG-AAATA-TQALNELLQHVKAHAAGPSQRLALPAQLALAESALSVVQLEKDLQEKAAAKLKPL-EC-LSTAVAIAGIAARDVGGRSQAARGVAVVLDTASDVLDKASSLIEEAKK---AAGHPDESQQRLAQ--VAKAVTQALNRCVSCLPGQPLKLLLAAKA--Q-QMACQSLGEP------------TEENRARAATAPLLEAVDNLSAFSNP | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |