>PF12679 (303 residues) WNLALKELYVSVKSRRFIVIVVLYFIIFGLAVYSIKDYLVQMGVPSVDSNELGLWGVSAE IYTTPLAMLFTVNMTIITVLGAVLGVALGADAINREVESGTVRVLLGHPVYRDEIINGKF LGMGLLIAVTYMVSYIVMIAVMLILGIPLDGESLFRSFLAILVTMLYTMVFLSLGILLST LSKKPETSMLAGVGLAIFLTVFYGIVVGIVAPKLAGPEPPIGTSAYQIWADELHVWMNRL HSINPAHHYVQLVSYIFAGDRFFNYYIPLSDSLIYGFNNLAALLVMLLLPFALAYARFLT SDL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | WNLALKELYVSVKSRRFIVIVVLYFIIFGLAVYSIKDYLVQMGVPSVDSNELGLWGVSAEIYTTPLAMLFTVNMTIITVLGAVLGVALGADAINREVESGTVRVLLGHPVYRDEIINGKFLGMGLLIAVTYMVSYIVMIAVMLILGIPLDGESLFRSFLAILVTMLYTMVFLSLGILLSTLSKKPETSMLAGVGLAIFLTVFYGIVVGIVAPKLAGPEPPIGTSAYQIWADELHVWMNRLHSINPAHHYVQLVSYIFAGDRFFNYYIPLSDSLIYGFNNLAALLVMLLLPFALAYARFLTSDL | |||||||||||||||||||
1 | 5nj3A | 0.10 | 0.08 | 0.82 | 1.17 | DEthreader | RWVSKRSFKNLLNPQASIAQIIVTVVLGLVIGAIYF----------G------------LKNDSTGIQNRAGVLFFLTTNQCFSSVS-AVELFVVEKK-LFIHEYISGYYRVSSYFLGKLLDLLPMRMLPSIIFTCIVYFML----GLKPK--ADAFFVMMFTLMMVAYSASSMALAIAAGQSVVSVATLLMTICFVFMMIFSGLLVNL-TTIA------------------SW-LS-WLQYFSIPRYGFTALQHNEFLGEYLVK-G--DLSPWGLWKNHVALACMIVIFLTIAYLKLLFLKK | |||||||||||||
2 | 5xjyA | 0.12 | 0.11 | 0.89 | 1.17 | DEthreader | VALLWKRLLIARSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYP-----NLTKQQLSEVALM-T-TSVDVLVSICVIFAMSFVP-ASFVVFLIQERVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQ--Q-KSYVSS--TNLPVLALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGIN-GSVATF-VLELNNI-------------N-DILKSVFLIFPHFCLGRGLIDMVKNQAMADAR--VSPLSWDLVRNLFAMAVEG-VVFFLITVLIQYRFFGD | |||||||||||||
3 | 6xjhA | 0.15 | 0.12 | 0.80 | 2.01 | HHpred | LNLVKYDLYSIFKSPLTYLAILVVSSLIATQSILMAN--SM----D--------N------PKHII--V-YGSVAAAKWLLLIIGLMFVVKTITRDFSQGTIQLYMSKVKTRVGYIISKTISIILISILFALIHYVILIVVQASNGKNLAFS---KYVDNLWFFLIFLLFFGLFLFLITLASQKTAMIFSLGVFLVLIVPFIKPFIT---------FIPR-Y-------GEKV---LDAFDYI-PFAYLT---DKMISSN----FDFS-------NWQWVISLGSI-VIFFILNILYVAKKDI | |||||||||||||
4 | 6xjhA | 0.13 | 0.11 | 0.79 | 1.22 | DisCoVER | ILLVKYDLYSIFKSPLTYLAILVVSSLIATQSI-----------LMA--N---SMDNPKHII---VYG-SV--FAAAKWLLLIIGLMFVVKTITRDFSQGTIQLYMSKVKTRVGYIISKTISIILISILFALIHYVILIVVQASNGKNL---AFSKYVDNLWFFLIFLLFFGLFLFLITLASQKTAMIFSLGV-FL---VLIVPFIKPFIT----------------FIPRYGEKVLDA-FDYIPFAYLTDKMI--S-----S-----N---FDFSNWQWVISLGSIVIFFILNILYVAKK-- | |||||||||||||
5 | 6xjhA | 0.13 | 0.11 | 0.80 | 0.55 | MRFsearch | -NLVKYDLYSIFKSPLTYLAILVVSSLIATQSILMANSMDN----------------------PKHIIVYGSVFAAAKWLLLIIGLMFVVKTITRDFSQGTIQLYMSKVKTRVGYIISKTISIILISILFALIHYVILIVVQASSN--GKNLAFSKYVDNLWFFLIFLLFFGLFLFLITLASQKTAMIFSLGVFLVLIVPFIKPFITFI---------------------PRYGEKVLDAFDYIPFAYLTDKMISSNF---------------DFSNWQWVISLGSIVIFFILNILYVAKKDI | |||||||||||||
6 | 6xjhA | 0.14 | 0.11 | 0.80 | 1.62 | SPARKS-K | LNLVKYDLYSIFKSPLTYLAILVVSSLIATQSILMA-------NSMDNPKHIIV---------------YGSVFAAAKWLLLIIGLMFVVKTITRDFSQGTIQLYMSKVKTRVGYIISKTISIILISILFALIHYVILIVVQASS--NGKNLAFSKYVDNLWFFLIFLLFFGLFLFLITLASQKTAMIFSLGVFLVLIVPFIKPFIT-----------FIPRY----------GEKVLDAFDYIP---FAYLTDKMISSNFDFS------------NWQWVISLGSIVIFFILNILYVAKKDI | |||||||||||||
7 | 5do7A | 0.09 | 0.08 | 0.84 | 1.18 | MAPalign | GVLLRRVTRNLVNKLAVITRLLQNLIMGLFLLFFVLRVRSNVLKGA--------------------IQDRVGLLYQFVGATPYTGMLNAVNLFPVLRA--VSDQESDGLYQKWQMMLAYALHVLPFSVVATMIFSSVCYWTL---GLHP---EVARFGYFSAALLAPHLIGEFLTLVLLGIVQNPNIVNSVVALLSIAGVLVGS--GF------------------LRNIQEMPIPFKIISYFTFQKYCSEILVVNEFYGLNFTCAFTQGIATSRFTMNFLILYSFIPALVILGIVVFKIRDH | |||||||||||||
8 | 5do7A2 | 0.08 | 0.06 | 0.81 | 0.93 | CEthreader | ---------NKLAVITRLLQNLIMGLFLLFFVLRV-----------------------RSNVLKGAIQDRVGLLYQFVGATPYTGMLNAVNLFPVLRAV-SDQESQDGLYQKWQMMLAYALHVLPFSVVATMIFSSVCYWTLGL------HPEVARFGYFSAALLAPHLIGEFLTLVLLGIVQNPNIVNSVVALLSIAGVLVGSGFLRN--------------------IQEMPIPFKIISYFTFQKYCSEILVVNEFYGLNFFIEKTCPGATSRFTMNFLILYSFIPALVILGIVVFKIRDH | |||||||||||||
9 | 6an7D | 0.14 | 0.11 | 0.78 | 0.91 | MUSTER | LELVRQEIKNRYDTVLGIWWAFLWPILLVLIYTLIFSHLIGT----------------------VYAYSIYLSSGIFPWFFFSNSLSRITGIFTEKK-----FLFTKIPIRLEVFPVVVIISELINYLIGISLVTLISFITLG----FEGIKYF---YLFPVALYLMIVYSFSIGMVLGTLNVFFRDIKEIIGVFLQIFFWFTPIV-----------YTLDI----------LPPFVKKLIYYNPMYPVVSIHHLVFVNYLDLH------------LYSLLGFLLASPLVFFVSYYFFKKLEK | |||||||||||||
10 | 6xjhA | 0.13 | 0.11 | 0.80 | 3.58 | HHsearch | LNLVKYDLYSIFKSPLTYLAILVVSSLIATQSILMAN--S-----MD-----------NP-KHIIVYGSVF---AAAKWLLLIIGLMFVVKTITRDFSQGTIQLYMSKVKTRVGYIISKTISIILISILFALIHYVILIVVQASSGKN---LAFSKYVDNLWFFLIFLLFFGLFLFLITLASQKTAMIFSLGVFLVLIVPF----IKPFIT-------FIP----------RYGEKVLDAFDYIPFAYLTDKM---ISSN----------FD-FSNWQWVISLGSI-VIFFILNILYVAKKDI | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |