Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100
| | | | | |
| Seq | GVPPAPALHEAMDEVLDKQTEQLAIPRRFTSDMKELWVLQPRFEQRSGQRPFRLLEHPRFRAAYDFLLLRCESGEVPTELGDWWTSFQNADADARATMLVADSGPVKKRRKRRRR |
1 | 3aqkA2 | 0.41 | 0.37 | 0.90 | 1.17 | DEthreader | | GLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLALRAEVERNLQRLVKWWGEFQVSAPPDQKGMLNELD------------ |
2 | 3aqkA | 0.41 | 0.37 | 0.90 | 3.65 | HHpred | | GLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLALRAEVERELQRLVKWWGEFQVSAPPDQKGMLNELD------------ |
3 | 2lcuA2 | 0.09 | 0.04 | 0.50 | 0.55 | DisCoVER | | -LKEQ--------------------------------I-DWLAERYSADLGIESRLL---AIAKEFHKLKSVLCTGV--NE--TP-------------A--HVANRVSMLVLIT- |
4 | 3aqkA2 | 0.41 | 0.36 | 0.87 | 1.22 | MRFsearch | | ---YHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLALRAEVEAELQRLVKWWGEFQVSAPPDQKGMLNELD------------ |
5 | 3aqkA2 | 0.40 | 0.36 | 0.89 | 0.79 | MAPalign | | -LTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLALRAEVERNLQRLVKWWGEFQVSAPPDQKGMLNELD------------ |
6 | 4pacA | 0.10 | 0.10 | 0.99 | 0.48 | CEthreader | | MDALIAQLQRQFRDYTISLYQQGFLPDFVSEVLSLFFEDCVKLISNMARALTGTVDFSQVGASVHQLKGSSSSVGA-KRVKTLCVSFKECCEAKNYEGCVRCLQQVDIEYKALKT |
7 | 5cwpA2 | 0.11 | 0.10 | 0.96 | 0.60 | MUSTER | | SSSDVNEALKLIVEAIEAAVRALEAAERTGD--PEVRELARELVRLAVEAAEEVQRNPSSEEVNEALKKIVKA---IQEAVESLREAEESDPEKREKARERVREAVERAEEQRDP |
8 | 3aqkA2 | 0.41 | 0.37 | 0.90 | 1.65 | FFAS-3D | | GLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLALRAEVERNLQRLVKWWGEFQVSAPPDQKGMLNELD------------ |
9 | 3aqkA | 0.37 | 0.31 | 0.85 | 1.00 | DEthreader | | -LTYHDAFAAMNDVL-EA--SL-AIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLALRAEVERNLQRLVKWWGEFQVSAPPDQKGMLNELD------------ |
10 | 3aqkA | 0.41 | 0.37 | 0.90 | 1.17 | DEthreader | | GLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLALRAEVERNLQRLVKWWGEFQVSAPPDQKGMLNELD------------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|