>PF12600 (442 residues) GGEVKRLRFEARQIEFYPRGWQARNVRITNDPFSPPELELRADQVTLTREAPLIDRITTQ RQRLVLDQNVVIPIPVNQQTIDRRERETSPFIVSPGYDGDKRGGLFVERGFTVINTEQTR LGITPQFFVQRAIQGSDNLASLFGVKARLNAVLSPTATLQGSGELTSFDFDTIDENLKAS LRLRQTLGNVNPHVVNWEYSYRDRLYNGTLGFQTVQSSLGGVITSPVIALGQSGVNLSYQ AGAQYINANTDRQDLLDVNRDNDRISLGRLQGSVALSKGFLLWQGKPLAPTATEGLRYTP TPVVPYLQAVAGVTGTTSYYTNGDNQNTLTGSIGLLGQLGNFSRPFLDYTAFNVTYSQGL NSGLSPFLFDRSVDNKVLSAGISQQIYGPLRLGFQTSINLDTGRESSTDYIVEYSRRTYG ITLRYNPVLELGGLSIRISDFN |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | GGEVKRLRFEARQIEFYPRGWQARNVRITNDPFSPPELELRADQVTLTREAPLIDRITTQRQRLVLDQNVVIPIPVNQQTIDRRERETSPFIVSPGYDGDKRGGLFVERGFTVINTEQTRLGITPQFFVQRAIQGSDNLASLFGVKARLNAVLSPTATLQGSGELTSFDFDTIDENLKASLRLRQTLGNVNPHVVNWEYSYRDRLYNGTLGFQTVQSSLGGVITSPVIALGQSGVNLSYQAGAQYINANTDRQDLLDVNRDNDRISLGRLQGSVALSKGFLLWQGKPLAPTATEGLRYTPTPVVPYLQAVAGVTGTTSYYTNGDNQNTLTGSIGLLGQLGNFSRPFLDYTAFNVTYSQGLNSGLSPFLFDRSVDNKVLSAGISQQIYGPLRLGFQTSINLDTGRESSTDYIVEYSRRTYGITLRYNPVLELGGLSIRISDFN | |||||||||||||||||||
1 | 4q35A | 0.11 | 0.10 | 0.91 | 1.79 | HHpred | -YQMRQGRGKADLMKQRGEYTILDNGSFTSCLPGSDTWSVVGSEIIHDRE---EQVAEIWNARFKVGPVPIFYSPYLQLPVGDK-RRSGFLIPNAKYTTT--NYFEFYLPYYWNIAPNMDATITPHYMHRRGI----------MWENEFRYLSQA-GAGLMEL--DYLPSDKDDSSRRWLFYWNHSGVMDQNFNATVSTKQFQVFSEQ--NTSSYSAEPQLDVNYYQNDVG--PFDTRIYGQAVHFVNTRD-----------DMPEATRVHLEPTINLPLSN-NWGSINTEATNKLDESVNRVMPQFKVDGKMQYLYVPYRDQDSASANQVTTGVTSRIYD-D-AAVERFNISVGQIYYFTEDKTGSQYDSKNGISQVGAVASRPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNAIGFNIELRGLS | |||||||||||||
2 | 4q35A | 0.09 | 0.09 | 0.98 | 1.04 | SPARKS-K | QMVGRQGRGKADLMKQRGENTILDNGSFTSCLPGSDTWSVVGSEIIHDREE---QVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFL-IPNAKYTT--TNYFEFYLPYYWNIAPNMDATITPHYMMELDYHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSNDFDNKYGSDGYATQKFSVVQNFNATVSTKQFQVFSEQNTSSYSAEFDTRIYGQAVHFVNTRDDINTEAKFLATHYQQTNLDWYNSRNTTKLDE-SVNRVMPQFKVDGKMVIYNYDSSLLQSDRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITSLVWAGDTYWRISERWGYIQAQYKNGISQVGAVASRPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERQHNAIGFNIELRGLS | |||||||||||||
3 | 4q35A | 0.09 | 0.09 | 0.96 | 1.47 | MAPalign | ----RQGRGKADLMKQRNRYTILDNGSFTSCLPGSDTWSVVGSEIIHDRE---EQVAEIWNARFKVGPVPIFYSPYLQLPVGWNIAPNMDATITPHYM-HRRGNIMWENEF-RYLSQAGAGLMELDYLPSDDEHPNDDSSRRWLFYWNHSGYAVQNFNATVSTKQFQVFSEQNTSSAEPQLDVNYYQNDVPFDTRIYGQAVHFVN--TRDDMPEATRVHLEPTINL-PLSNNWGSINTEAKFLATHYQQTNLDWYSRNTTKLDESVNRVMPQFKVDGKLYVIYNYDSSLLQSDYSGLDRTYGGLDRSANQVTTGVTSRIYDDERFNISVGQIYNSSIEYR----RDEDRLVQLNYHYAPYIQATLPKYYSYKNGISQVGAVASRPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNAIGFNIELRG-- | |||||||||||||
4 | 4q35A | 0.08 | 0.08 | 0.99 | 1.08 | CEthreader | QMVGRQGRGKADLMKQRNRYTILDNGSFTSCLPGSDTWSVVGSEIIHDR---EEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYFDTRIYGQAVHFVNTRDLPLSNNWGSINTEAKFLATHYQQTNLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAYYFTESRTGDDNITWENDDKTGSIEYRRDEDRLVQLNYHYEQYKNGISQVGAVASRPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYD | |||||||||||||
5 | 4q35A | 0.12 | 0.12 | 0.96 | 3.74 | HHsearch | DTNVRQGRGKADLMKQRGEYTILDNGSFTSCLPGSDTWSVVGSEIIHDRE---EQVAEIWNARFKVGPVPIFYSPYLQLPVGDK-RRSGFLIPNAKYTTT--NYFEFYLPYYWNIAPNMDATITPHYMHRRGIMWENEFSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPFNDTDGYATQKFSVGYAVQ---NFNATVSTKQFQVFSEQ--NTSSYSAEPQLDVNYYQNDVG--PFDTRIYGQAVHFVNTRDRVPLSNQTNLKLDESVNRVMPQFKVDGKMVFERDMGYTQEPRAQYLYVPYRIASANQVTTGVTSR--IYDD-AAVERFNISVGQIYYFTESKTGSLNVATSQLNYHYASPEYIYSTAEQYKNGISQVGAVASRPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNAIGFNIELRGLS | |||||||||||||
6 | 4q35A5 | 0.14 | 0.03 | 0.19 | 1.00 | HHpred | -YQMRQGRGKADLMKQRENRYTIDNGSFTSCLPGSDTWSVVGSEIIHDRE---EQVAEIWNARFKVGPVPIFYSPYLQLPVGDK-RR-SGF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 5ivaA | 0.08 | 0.07 | 0.92 | 1.42 | MAPalign | ---RRQSGFLPPSFSSTSDTGFTLVTPYYFNLAPNYDATLYPRYMAKRYLTHSSEGIVNAAYLNDKDDYSKDRWLYGLKNTTGLDSRWLAEVDYTRIGVGSTTYVNQRGTL-TYRGDTFTGRLNAQAYQLATT---TDVTPYDRPQITFDGFLGMQFTYGTEFVRFDRQGLARATGDRMHEPGSLPMTRSWGYVTPTLKYLYTKYDLSFDSNQDRSLLVKVDSGLYFDRDTTFRQTLEPRAMYLYVVFDTSEPSLWRENRFTGDRDANQLSLGVTSRFIEE------------------------NGFERASISAGQIYYFRSWRSYAFESGSAIFHYQPE---VDPGKVVNVGYRYRADRRFDSSRGTFRYGIIKQHDFSVIWPLVPQWSVLARWQYDYNKNRTLEAFGGFEYDSCCWKLRLINRYWLRGIFLQIVLK--- | |||||||||||||
8 | 5ixmA | 0.09 | 0.09 | 0.95 | 1.07 | CEthreader | ----SMSGFLIPNAKFTSNNGFEFLLPYYWNIAPNFDATITPHYME-------RRGLQWQNEFRYLLAPGSGTMALDWLPNDRIYT-------GPDGTDKNATRWLYYWGHSGVMDQVWRFNINYTRVSDPTSQYGSTTDGYATQIFTAGYANENWNATLSSKQFQVFTAAGNSNAYQPQLDMNYYKNDVGPFDMHVYGQAAKFTSVNPTNPEASRFHIEPTVNLP-LSNSWGSINTEAKLLATHYQQDIPASFADNASNPKLKDSVNRVLPQFKVDGKVVFDRSMDWATGFTQQYLYVPYRNQDDIYIYDTTLMQSDYSGLFRDRTYSGLDRIASANQVSTDDARVERFNVSVGQIYYF-SRSRTGNTENATGSLVWAGDTFWRINDQLGLKGGAQYDTRLGSLTLGNAIMEYRKRMIQLNYRYASPKYIQAAVPKVYNPD | |||||||||||||
9 | 4q35A5 | 0.14 | 0.03 | 0.20 | 2.10 | HHsearch | DYQMRQGRGKADLMKQRGNRYTIDNGSFTSCLPGSDTWSVVGSEIIHDRE---EQVAEIWNARFKVGPVPIFYSPYLQLPVGDK-RR-SGFL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 5ixmA | 0.06 | 0.06 | 0.94 | 1.39 | MAPalign | --SNNGFEFLLPYYWNIPNFDATITPHYMER------RGLQWQNEFRYLL-APGSGTMALDWLDRITDKNATRWLYYWGHSGVMDQVWRFNINYTRVSDPAYFGYATQIFTAGYANENWNATLSSKQFQVFTA-AGNSNAYRAQPQLDMNYYKGPFDMHVYGQAAKFTSVNNPEASRFHEPTVNLPLSSWGSINTEAKLLATHYQQNPKLKDSVNRVLPQFKVDGKVFDRTGFTQTLERAQYLYVRQIDTTLMLFRDRTYSGLDRISANVSTGLTSRIIYYFSRSR-------------TGNTENATGSLVWAGDTFWRIDQLGLKGGAQYDTNAIMEYRK----DADRMIQLNYRYASPKYIQAAVPKVYNPGISQVGTTASWPIADRWAIVGAYYYDTKAKQPASQLVGLQYNTCCWAVNLGYERKIDNKIGFNIEGTAQ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |