>PF12520 (511 residues) CQRLDIRNHVTAIVSRRHLTRACHDAGLTPEELKSHQRQYPHLRFSGHPVQCLHGQHRLK AGEETLAPSDQWWIVDLYLDDISQDLQHALVDEYANERHPTDGEVYRKIRQYQHESNALF QNRWWSRLSPNKAKRLRQLFSQENTFICAGFDALLPIPGLWKGMSLGSLNSVFALKCDEE IVHYLRVIWTFWAALANHDRTWMARIDTHTVDELQLYAPRASKVDWTTVKGKILSGEVFS NFSRSERASIWENLRSKEACDGIIPSLHTFFRDISYLELCANAVKRLVVLNKQRPTVRSA LVHSFRPRHGDGDYLVQTSETTFRRQRGSTTECITSGYRQIWMYAMRHYPDMAKDVQCGH PKANPARAKARAKADESVIHDMAALAQKLGFRTPQIKEILKQSPDRQIARATLLKARKPD RYHYDSETFESLVDRIVECFVLAIPNESQPTMALVTGQAPKLHDRCGTPQEQAQKLDRPH LFMDRLHAETVRQKNLSSLEVRRCVYYAFFG |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | CQRLDIRNHVTAIVSRRHLTRACHDAGLTPEELKSHQRQYPHLRFSGHPVQCLHGQHRLKAGEETLAPSDQWWIVDLYLDDISQDLQHALVDEYANERHPTDGEVYRKIRQYQHESNALFQNRWWSRLSPNKAKRLRQLFSQENTFICAGFDALLPIPGLWKGMSLGSLNSVFALKCDEEIVHYLRVIWTFWAALANHDRTWMARIDTHTVDELQLYAPRASKVDWTTVKGKILSGEVFSNFSRSERASIWENLRSKEACDGIIPSLHTFFRDISYLELCANAVKRLVVLNKQRPTVRSALVHSFRPRHGDGDYLVQTSETTFRRQRGSTTECITSGYRQIWMYAMRHYPDMAKDVQCGHPKANPARAKARAKADESVIHDMAALAQKLGFRTPQIKEILKQSPDRQIARATLLKARKPDRYHYDSETFESLVDRIVECFVLAIPNESQPTMALVTGQAPKLHDRCGTPQEQAQKLDRPHLFMDRLHAETVRQKNLSSLEVRRCVYYAFFG | |||||||||||||||||||
1 | 2pffB | 0.04 | 0.04 | 0.95 | 0.67 | DisCoVER | VGAQ---LVAIFGGCPLIGVIQLAHYVVTAKLPGELRSYLKGATGHSQGLVTAIAIPVYDTFDGTTTQFKATHILDFGPGGASG-LGVLTHRNGVRVIVGGGGGGGGGGGGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGG--GGGG-GGGGGGGGGGGGGGGGG----GGGGGG-GGGGGGGGGGGLIPADATFAGHSLGEYAALASLADVMSIESLVEGGGGGGGGGGGGGGGGGGGGG-GG--G----- | |||||||||||||
2 | 3c3lA | 0.07 | 0.05 | 0.66 | 0.67 | DEthreader | --------------------------------------------------TSNTAIKDAKDVAA-IDQALLPEGLEQF-T--VESTDVVENIIGLYTITE---S--PINSFPT-AIEEVLPTEKM----QLRNPN-QKAALKAEQAT-EFYVHTPMVYIMVEDSYQ-AYNMT-GRMQM-PQREILPTKATL-------------------GLAQALDIVREMSELTKLLEGNLKPAIDMMVEFNTTLLMEYSRYLAKSAFVTPLYV--EA--DG-VTNGPINAMMLMTTDWIRIAKLYQASTNALMELGDLLSLMD------FLPDINLLELKRGIAKNPLTITIYGS-----------------------------------LHFFVEPLRNGITQGE--VY-TEQLQKATQISVEPMTFYIA-------GV-GIPFMTIGTGGMQTTMGAPK-----IGLNDITASKANEAVYTSWIDQM--A--------AVGAP------------- | |||||||||||||
3 | 2y8nA | 0.06 | 0.05 | 0.95 | 0.66 | CEthreader | INYYMPLQYGFDGIIKLCDEKIAEVMGEAGDDGDFGMSRGYYYAAMKEITKGLSAWCENYSKRAKYLASIETDSEIKANYEKIEEVMGNIAHKKP--ANFWEAIQMTLCCHFGVVNEDPQSGLSIGRLGQVLQPFYEKDVEDGIMTDEEVIELLELYRIKITCIECFASAGVSGGVLSGNTFNNLS------LGGQNYDGLSAVTPLEYLIVEAGMRNQTPQPT---------LSVLYDEKTPEDFLMKAASCTK----------LGLGYPAWMNNQTGMNFMMRNYGPEGMDLHDARAWCLGGCLESAPGCFLPLEYNGKVTMIPGGASPTCGTGVHFIGMPKVLELVLTNGLDKRTGKQVYPPHNKKLDSYETNQWKEYMELTTDVVNRCNNIQMDIWRKYNMPAVNSLLKPDCFKKGKHIGTMGARYNSCINFESCGTITFVNSLSSIKKNVFDDSKFTIEEMTDAMLNNFGFKTAYETEVFSPDFRESTDKSTKYEKIFAACVNAPK | |||||||||||||
4 | 4xgtA | 0.07 | 0.06 | 0.89 | 0.73 | EigenThreader | SVASIEREESVLVSAHEYAIAQCLKKNQEIHYMRDLLPDKVRYVF-----LSATIPQFAEWIAKIHR----QACHVVYTDFRPTECEQMALASSSMKFNAPDEENMVNKVFENALASLSEDDKN----LPQISNILPLLRKGTSSEYIQMAGRAGRRGLDDRGVIMMVDRAIVVGNQD-------------------KLN--SAFHLGYNMVLNLLRIEAISPEYMLERCFFQFQNAASVPQLERELISLQ--------------QERDAIIVKDYYGVRQQLEEYNKDMVFVIQHPQNCLGFFQEGYPEQESVLLKVSGDFVVPCLLNCDEKDGVGKAVDEIKLLRKIEVLESRLVANPLHNSPLLVELWNQYSLKMQLGEQIKEKK------KAIARAHSLDELKSRKRVLRRLGFINDAEVVQMKARVACEELLLAELLFNRFFNELSSCFIFDEKIETQALKEELAKPFREIQAQARIIAKVSAEVQSLKWQLMETVLAWAQGGSLI | |||||||||||||
5 | 1vz0B | 0.12 | 0.04 | 0.34 | 0.32 | HHpred | -IRPNPRQPRK-RFAEESLKELAD-------SIRKGLLQPLLVRPQGDGYELVAGERRYRAALMAGLQEVP---AVVK--DLTDEALLALV-ENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRL-LQLPPEALEALER--------GEITAGHARALLMLEPEDR-L-W------GLKEILEKG------LSVRQAEAL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 6nmiD1 | 0.14 | 0.08 | 0.62 | 0.50 | MRFsearch | ----------------RNLQEFLGGSPGVLDRLYGH-------------------PATCLAVFRELPSLAKNWVMRMLF--------------------------------LEQPLPQAAVALWVKEFSKAQEESTGLLSGLRNPIFRQNLRIALLGGGKAWSRDVPSLDKYA-----------EERWEVVLHFMVGSPSAAV---SQDLAQLLSQAGPCITSAGFQFLLL---------DTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLLLNFLQHLRVFQRSRRYYPTRLAINLSSVHQPGFIVVET---NYRLYAY-TESELQIALIALFSEMLYRFPNMVVAQ---------------------VTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQT-------------PVLPPTITDQIRLWELER-------------------------------------------------------------------- | |||||||||||||
7 | 2x1gF | 0.09 | 0.07 | 0.87 | 0.96 | FFAS-3D | ---------CYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHRQIPRLMRVLAE--------IPYEKLNVKLLGTTMGSYCN-WLMYIPPAINLLVRGLNSSMSAQATLGLKELCRDCQLQLKPYA----DPLLNACHASLNTGRMKNSDSVRLMFSIGKLEIPKYLDIIVSPCFEELQAICQATPAARIRT-IFRLNMISTLFSSLNQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSQPMLQDLCLFIVASFQCCAPTLEISKTAIVMFFKPREFIQHSFKLFESTPEQN---------------FSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMNHAHVTEVVLA-TGEQTLYTAMMCV----GYLTPRSQVDKFADEMAVWMKSLMSTPNFPTQLIT---------------DADKTR-----YTALIIKEKVNKRLLQQHL--SEMAMKTRG | |||||||||||||
8 | 5ifeC | 0.08 | 0.07 | 0.94 | 0.72 | SPARKS-K | NTTARAFAVVASALGIPSLLPFLKAVCKSGCAILPHLRSLHGLVDEQQKVRTISALAIAALAEAATPY----------GIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFRRNYRQLVDTTVELANKVG------AAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGA-ADIDHKLEEQLIDGILYAFQDSVMLVVNALGKRVKPYLPQICGTVLWRLNNKSAKQQAADLISRTAVVKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM---HKMTPPIKDPRLTPILKNRHEENCIDLVGRIADRGAVSCFELLELLKRRATVNTFGYIAKAIG-PHDVLATLQN-RVCTTVAIAIVAETCSPFTVLPANEYRVPELNVQNGVSFLFEYIGEMGKDYPLLEDALMDRDL-------VHRQTASAVVQH | |||||||||||||
9 | 6xteA | 0.10 | 0.08 | 0.79 | 1.10 | CNFpred | -----------------IAAELARNL-----IDEDGNNQWPEG------LKFLF-VGLREAALHIF-----WNFPGIFGNHYLDVIKRMLVQCMQDQEHPIRTLSARATAAFILANNVALFKHFADLLP-GFLQAVNDSCYQNDDSVLKSLVEIATVPKYLRPHLEATLQLSLKLCQRQLALEVIVTLSETAAAMLRKHTNIVAQTIPQMLAMMVDL-DSNAVAGESALDRMACGL-----GGKLVLPMIKEHIMQMLQ----NPDWKYRHAGLMALSAIGEGCHQQME-----GILNEIVNFVLL--------FLQDP----------HPRVRYAACNAVGQMATDFAPGFQKK------------------FHEKVIAALLQTMEDQ--GNQRVQAHA-----AAALINFTEDCPKSLLI----PYLDNLVKHLHSIMVLKL-------QELIQKGTKLVLEQVVTSIASVADTAE-DLFMPSLKHIVENAVQKELRLLRGKTIECISL | |||||||||||||
10 | 6awb03 | 0.08 | 0.05 | 0.63 | 0.67 | DEthreader | HSSGKVLPKDNLATTTELKVVAKDYICAAN---------------IETLFTN--DLDHG-------------PYISETLRNSKDDIIDVMKKLIIGEVDDIDHLGNRRIR--GE---N---------------------QLSQHKRRI-----------PTHYGRVCPIETP-NI--I-SLSVYAQTETPYRKVVTDEIHYLSA-EEGNYVIAQANSNL---DEEGHFVEDLVTLFSRDQVD----Y--M---D-------VSTQQVVSVGASIARALMGANMQRQAVP------DSGVSQNTCINQMPCVSL-------------DVLADGPSTDGELALGQNM-RVAF-------------------F--EDSILV-SERVVQEDRFTTIHIAVKRRIQPGDK----------------------------S-KIN-PIEDMPYDEN------------------SRMNIGQILETHLGMAAKIGAYDLGADVRIATPVFDG------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |