>PF12460 (438 residues) PAFVATLPDFDDGTNSNYLPTLESLAQISVEKDIFETLVRRLLSKFNILLQKEQPGSVAY PRAILVTILYVMSQRKMDQDPNLELYYDKIVVSLCRNAAISASGKANNNILNDATVLDTL GRLCNLIVRALPRNKQDEVAENVYTLYSSADDFPSVPFSQSASDDQQRTMIISTYLLAGL PTDCASLPYTSPNMSALLFDVVKRSTTECAPATHLALLRHLSLLVNKFLPKSELSLATEL FDTLLPSNAEGKTLSPESIKTLFWLSKALVLRLAPKTSDHLTSLLSLLSSPDKVTSTTAA HGFAILLRDDDVLSTANGANIRLLSKQRVFTTLVPLISSKIREVNVAGSDSPTPEHIKPA HLTALSGILSTIPPSLVMPELPTLLPLLLQSLDLQTSESQSVRIATLETLAVIIRDNGVG VIEECGHIQSLVTRLLKT |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | PAFVATLPDFDDGTNSNYLPTLESLAQISVEKDIFETLVRRLLSKFNILLQKEQPGSVAYPRAILVTILYVMSQRKMDQDPNLELYYDKIVVSLCRNAAISASGKANNNILNDATVLDTLGRLCNLIVRALPRNKQDEVAENVYTLYSSADDFPSVPFSQSASDDQQRTMIISTYLLAGLPTDCASLPYTSPNMSALLFDVVKRSTTECAPATHLALLRHLSLLVNKFLPKSELSLATELFDTLLPSNAEGKTLSPESIKTLFWLSKALVLRLAPKTSDHLTSLLSLLSSPDKVTSTTAAHGFAILLRDDDVLSTANGANIRLLSKQRVFTTLVPLISSKIREVNVAGSDSPTPEHIKPAHLTALSGILSTIPPSLVMPELPTLLPLLLQSLDLQTSESQSVRIATLETLAVIIRDNGVGVIEECGHIQSLVTRLLKT | |||||||||||||||||||
1 | 6tc0C | 0.24 | 0.22 | 0.91 | 1.33 | DEthreader | PKLAEELHKGES-KCSRHFRCLQALSAVSTHPSIVKETLPLLLQHLCQAN-K-GNMVTEEVVAVCQSLQQVAEKCQ--QDPESYWYFHKTAVPCLFALAVQ-ASMP--L--LEDEVLAALASVIGTATTHLSPELAAQSVTCIVPLFLDGNTSFFQPFQDGSS-GQRRLVALLTAFVCSLP-RN-VEIPQLNRLMRELLKQSCG-HSCP-F-SSTAATKCFAGLLNKQPLEEFLQLAVGTVEAGLA-SE---SSRDQAFTLLLWVTKALVLRYHPLSACLTTRLMGLLSD-PE-LGCAAADGFSLLMSDCTVLTRAGHADVRIMFRQRFFTDNVPALVQGFHAA---------PQDVKPNYLKGLSHVLNRLPKPVLLPELPTLLSLLLEAL-S--CPDSVVQLSTLSCLQPLLL-EAPQ-IM--SLHVDTLVTKFLN | |||||||||||||
2 | 6tc0C | 0.22 | 0.20 | 0.92 | 1.17 | DEthreader | SLPKLAEELH-KGESKCRHFRCLALSAVSTHPSIVKETLPLLLQHLC-QA--NKGNMVTESSEVVAVCQSLQQVAEKCQDPESYWYFHKTAVPCLFALAVQA-SMP--L--LEDEVLAALASVIGTATTHLSPELAAQSVTCIVPLFLDGNFQ--PFQD-GSSGQRR-LVALLTAFVCSLP-R--NVEIPQ--LNRLMRELLKQSCGHSCPFSSTAATKCFAGLLNKQPPGQQLEEFLQLAVGTVEAGLASESSRDQAFTLLLWVTKALVLRYHPLSACLTTRLMGLLSDPELG-C-AAADGFSLLMSDCTDLTRAGHADVRIMFRQRFFTDNVPALVQGFHAA---------PQDVKPNYLKGLSHVLNRLPKPVLLPELPTLLSLLL-EALS--CPDSVVQLSTLSCLQPLLLEAPQIMSL----HVDTLVTKFLN | |||||||||||||
3 | 6tc0C2 | 0.25 | 0.22 | 0.90 | 7.25 | HHpred | ------------TKCSRHFRCLQALSAVSTHPSIVKETLPLLLQHLCQANKGNMVTESSEVVAVCQSLQQVAEKCQ-QDPESYWYFHKTAVPCLFALAVQASM------PLLEDEVLAALASVIGTATTHLSPELAAQSVTCIVPLFLDGNTSFLFPFQPDGSSGQRRLVALLTAFVCSLPR---NVEIP--QLNRLMRELLKQSCGHSCPFSSTAATKCFAGLLNKQPPGQQLEEFLQLAVGTVEAGLASESSRDQAFTLLLWVTKALVLRYHP-LACLTTRLMGLLSDPELGC--AAADGFSLLMSDCTVLTRAGHADVRIMFRQRFFTDNVPALVQGFHAA---------PQDVKPNYLKGLSHVLNRLPKPVLLPELPTLLSLLLEALSCPDS---VVQLSTLSCLQPLLLEAP-QIM--SLHVDTLVTKFLNL | |||||||||||||
4 | 6tc0C2 | 0.25 | 0.22 | 0.90 | 1.16 | DisCoVER | --------------CSRHFRCLQALSAVSTHPSIVKETLPLLLQHLCQANKGNMVTESSEVVAVCQSLQQVAEKCQQDPE-SYW-YFHKTAVPCLFALAVQAS---MPLLED--EVLAALASVIGTATTHLSPELAAQSVTCIVPLFLDGNTSFPFQP-FDGSSGQRRLVALLTAFVCSLPR-N--VEIP--QLNRLMRELLKQSCGHSCPFSSTAATKCFAGLLNKQPPGQQLEEFLQLAVGTVEAGLASESSRDQAFTLLLWVTKALVLRYHPLSACLTTRLMGLLSDPELG-C-AAADGFSLLMSDTDVLTRAGHADVRIMFRQRFFTDNVPALVQGF--HA-------APQDVKPNYLKGLSHVLNRLPKPVLLPELPTLLSLLLEALSCP---DSVVQLSTLSCLQPLLLEAPQIMSLHVDT---LVTKFLL- | |||||||||||||
5 | 6tc0C2 | 0.26 | 0.23 | 0.90 | 0.60 | MRFsearch | --------------CSRHFRCLQALSAVSTHPSIVKETLPLLLQHLCQANKGNMVTESSEVVAVCQSLQQVAEKCQQD-PESYWYFHKTAVPCLFALAVQAS------MPLLEDEVLAALASVIGTATTHLSPELAAQSVTCIVPLFLDGNTSNSFPFQPFGSSGQRRLVALLTAFVCSLPRNV-----EIPQLNRLMRELLKQSCGHSCPFSSTAATKCFAGLLNKQPPGQQLEEFLQLAVGTVEAGLASESSRDQAFTLLLWVTKALVLRYHPLSACLTTRLMGLLSDPELG--CAAADGFSLLMSDTDVLTRAGHADVRIMFRQRFFTDNVPALVQGFHAA---------PQDVKPNYLKGLSHVLNRLPKPVLLPELPTLLSLLLEALSCP---DSVVQLSTLSCLQPLLLEAPQIM---SLHVDTLVTKFLNL | |||||||||||||
6 | 6tc0C2 | 0.24 | 0.22 | 0.91 | 1.78 | SPARKS-K | ------------TKCSRHFRCLQALSAVSTHPSIVKETLPLLLQHLCQANKGNMVTESSEVVAVCQSLQQVAEKCQ-QDPESYWYFHKTAVPCLFALAVQASMPL------LEDEVLAALASVIGTATTHLSPELAAQSVTCIVPLFLDGNTSFPFQPFQDGSSGQRRLVALLTAFVCSLPRNVE-----IPQLNRLMRELLKQSCGHSCPFSSTAATKCFAGLLNKQPPGQQLEEFLQLAVGTVEAGLASESSRDQAFTLLLWVTKALVLRYHPLSACLTTRLMGLLSDPEL--GCAAADGFSLLMSDCTVLTRAGHADVRIMFRQRFFTDNVPALVQGFHAA---------PQDVKPNYLKGLSHVLNRLPKPVLLPELPTLLSLLLEALSCPD---SVVQLSTLSCLQPLLLEA---PQIMSLHVDTLVTKFLNL | |||||||||||||
7 | 6tc0C | 0.24 | 0.22 | 0.93 | 0.82 | MAPalign | PKLAEELHKGESTKCSRHFRCLQALSAVSTHPSIVKETLPLLLQHLCQANKGNMVTESSEVVAVCQSLQQVAEKCQ--QDPESYWYFHKTAVPCLFALAVQASMP---LLE--DEVLAALASVIGTATTHLSPELAAQSVTCIVPLFLDGNTSFPFQPFQDGSSGQRRLVALLTAFVCSLPRNV--E-IP--QLNRLMRELLKQSCGHSCPFSSTAATKCFAGLLNKQPPGQQLEEFLQLAVGTVEAGLASESSRDQAFTLLLWVTKALVLRYHPLSACLTTRLMGLLSDPELG--CAAADGFSLLMSDCDVLTRAGHADVRIMFRQRFFTDNVPALVQGFHAA---------PQDVKPNYLKGLSHVLNRLAPQIMSLHVDTLVTKFLNLSSS---YSMAVRIAALQCMHALTRLP-TSVLLPY--KSQVIRALAKP | |||||||||||||
8 | 6tc0C2 | 0.23 | 0.21 | 0.91 | 0.72 | CEthreader | ------------TKCSRHFRCLQALSAVSTHPSIVKETLPLLLQHLCQANKGNMVTESSEVVAVCQSLQQVAEKCQ-QDPESYWYFHKTAVPCLFALAVQASM------PLLEDEVLAALASVIGTATTHLSPELAAQSVTCIVPLFLDGENSFPFQPFQDGSSGQRRLVALLTAFVCSLPRN-----VEIPQLNRLMRELLKQSCGHSCPFSSTAATKCFAGLLNKQPPGQQLEEFLQLAVGTVEAGLASESSRDQAFTLLLWVTKALVLRYHPLSACLTTRLMGLLSDPELG--CAAADGFSLLMSDCDVLTRAGHADVRIMFRQRFFTDNVPALVQGFHAAP---------QDVKPNYLKGLSHVLNRLPKPVLLPELPTLLSLLLEALSCPD---SVVQLSTLSCLQPLLLEAPQIMSLHVDTLVTKFLNLSSS | |||||||||||||
9 | 4uaeA | 0.14 | 0.12 | 0.86 | 0.87 | MUSTER | EAIVQNA---SSDNQGIQLSAVQAARKLLSSPPIDDLIKSGILPILVHCLERDD--NPSLQFEAAWALTNIASG----TSEQTQAVVQSAVPLFLRLL------------SPHQNVCEQAVWALGNIIGD-GPQCRDYVISLVVKPLLSF-------ISPSIPITFLRNVTWVMVNLCR----HKDPPPPMETIQEILPALCVLIH-HTDVNILVDTVWALSYLTDAGNEQIQMVIDSGIVPHLVPLLSHEVKVQTAALRAVGNIVTGTDEQTQVVLNCALSHFPALLTHPKEKINKEAVWFLSNITAGNQ-------------QVQAVIDALVPMIIHLLDK---------GDFGTQKEAAWAISNLTISGRKDQVAYLIQQVIPPFCNLLTV---KDAQVVQVVLDGLSNILKMAEGNLIEECG----GLEKIEQL | |||||||||||||
10 | 6tc0C2 | 0.25 | 0.23 | 0.90 | 4.05 | HHsearch | ------------TKCSRHFRCLQALSAVSTHPSIVKETLPLLLQHLCQANKGNMVTESSEVVAVCQSLQQVAEKCQ-QDPESYWYFHKTAVPCLFALAVQASM------PLLEDEVLAALASVIGTATTHLSPELAAQSVTCIVPLFLDGNTSFSFPFQPDGSSGQRRLVALLTAFVCSLPR---NVEIP--QLNRLMRELLKQSCGHSCPFSSTAATKCFAGLLNKQPPGQQLEEFLQLAVGTVEAGLASESSRDQAFTLLLWVTKALVLRYHP-LACLTTRLMGLLSDPELGC--AAADGFSLLMSDCTVLTRAGHADVRIMFRQRFFTDNVPALVQGFHAA---------PQDVKPNYLKGLSHVLNRLPKPVLLPELPTLLSLLLEALSCPDS---VVQLSTLSCLQPLLLEAP-QIM--SLHVDTLVTKFLNL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |