>PF12388 (206 residues) VYVGRDAHVTLEASREMLQPATKETQEQYRTTNLVGTSITKICVNPTSGFNSYSRLSQGL DLAIQNYNQRGLSFTMARGPTTGCSANITATTMSGTGGSAGFPSGGRPYGTINIGTGLQS YSVDVNEHVITHELGHAIGFRHTDYYNRNISCGSGGNEGTAGVGAIHIPGTPTTATVGGS IMNSCFRSTETGEFTSSDITALNYLY |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | VYVGRDAHVTLEASREMLQPATKETQEQYRTTNLVGTSITKICVNPTSGFNSYSRLSQGLDLAIQNYNQRGLSFTMARGPTTGCSANITATTMSGTGGSAGFPSGGRPYGTINIGTGLQSYSVDVNEHVITHELGHAIGFRHTDYYNRNISCGSGGNEGTAGVGAIHIPGTPTTATVGGSIMNSCFRSTETGEFTSSDITALNYLY | |||||||||||||||||||
1 | 3lq0A | 0.13 | 0.11 | 0.85 | 1.17 | DEthreader | GMFEGDIKLRAGRQ-PA--------RVGAAILGDLSGGVIPYTFAGV-----SGADQSAILSGMQELEEKTCIRFVP--R-TTESDYVEIFTS-GSGCWSYVGR-ISGAQQVSLQANGC-V----YHGTILHALMHAIGFYHEHTRRDYVTIN-----TSNFDIDT-SRYVGEDY-QYYSIMHYGSTDYDKAHMLQTDANQINNLY | |||||||||||||
2 | 3lq0A | 0.14 | 0.11 | 0.78 | 1.00 | DEthreader | ---------RGRQPA--R----------ILGDEYLSGGVIPYTFAGV-----SGADQSAILSGMQELEEKTCIRFVP--RT-TESDYVEIFTSG-SGCWSYVGRI-SGAQQVSLQ--AN-G-C-VYHGTILHALMHAIGFYHEHTRMDRDNYVTINY---------TYSRYVGEDYQYYSIMHYGLTDPDKAHMLQTDANQINNLY | |||||||||||||
3 | 1go7P1 | 0.21 | 0.18 | 0.89 | 2.19 | HHpred | --RGDGLTYSIDQAAAQI------TRENVSWNGTFGSANLTFKFLQSVFVKFNAEQIEQAKLSLQSWSDVNLTFTEVTGNK---SANITFGNYTGTQAYAYYPGNYQGAGSSWYNYNQRNGSEEYGRQTFTHKIGHALGLAHPGEYNAGEG--------DPSYND----AVYAEDSYQFSICSYWGENHYGGAPMIDDIAAIQRLY | |||||||||||||
4 | 1gxdA4 | 0.13 | 0.09 | 0.71 | 0.83 | DisCoVER | --PRCGNP-------------------DNFFPRPKWKNQITYRIIG--YTDLPETVDDAFARAFQVWSDVTPLRFSRIHD--GE-ADIMINFGRDGLLAHAFAPGTGVGGDSHFDDDELWTLGESLFLVAAHAFGHAMGLEHSQ--------------------------------DPGALMAPIY-TYTKNRLSQDDIKGIQLY- | |||||||||||||
5 | 1omjA1 | 0.19 | 0.16 | 0.83 | 0.48 | MRFsearch | ---------TVDQVADQLTR------SGASWHDLDGVINLTYTFLTATFSQFSALQKEQAKLSLESWADVKVTFTEGPA-ARGDDGHMTFANFSGGAAFAYLPNSSR-KGESWYLINKTPGEGNYGRQTLTHEIGHTLGLSHPGDYN-----------------PTYRDAVYAEDTRAYSVMSYWSEGAYASAPLLDDIAAVQKLY | |||||||||||||
6 | 1go7P1 | 0.18 | 0.17 | 0.92 | 1.95 | SPARKS-K | LTVNGKTSYSIDQAAAQIT----RENVSWNGTNVFKSANLTFKFLDTGFVKFNAEQIEQAKLSLQSWSDVNLTFTEVTGNKSANITFGNYTRDAGTQAYAYYPGNYQGAGSSWYNYNQNPGSEEYGRQTFTHKIGHALGLAHPG----------EYNAGEGDP--SYNDAVYAEDSYQFSICSYWGNGHYGGAPMIDDIAAIQRLY | |||||||||||||
7 | 1srpA | 0.20 | 0.18 | 0.91 | 0.82 | MAPalign | RGINGKDSFSNEQAGLFI---TRENQTWNGYKVFGQPVKLTFSFPDYGLSKFSAEQQQQAKLSLQSWADVNITFTEVAAG---QKANITFGNYSGTQAYAFLPNTQDLGGQTWYNVNVKHPAEDYGRQTFTHEIGHALGLSHP-------GDYNAGEGNPTYRDVTY-----AEDTRQFSLMSYWSETNTAAAPLLDDIAAIQHLY | |||||||||||||
8 | 3lq0A | 0.14 | 0.13 | 0.89 | 0.69 | CEthreader | GMFEGDIKLRAGRQPARVGAAILGDEYL------WSGGVIPYTFAGVS-----GADQSAILSGMQELEEKCIRFVPRTT-----ESDYVEIFTSGSGCWSYVGRISGAQQVSLQANGCV------YHGTILHALMHAIGFYHEHTRMDRDNYVTINYQMTSNFDIDTYSRYVGEDYQYYSIMHYGTDPYDKAHMLQTDANQINNLY | |||||||||||||
9 | 1omjA1 | 0.18 | 0.16 | 0.88 | 1.38 | MUSTER | HLVNGKPSFTVDQVADQLTRSGAS-----HDLNNDGVINLTYTFLTAPPVQFSALQKEQAKLSLESWADVKVTFTEG-PAARGDDGHMTFANFSAGAAFAYLPNSSR-KGESWYLINKTPGEGNYGRQTLTHEIGHTLGLSHPGDYNPTYR-----------------DAVYAEDTRAYSVMSYWSEGAYASAPLLDDIAAVQKLY | |||||||||||||
10 | 4gwmA | 0.17 | 0.14 | 0.82 | 2.44 | HHsearch | DLFEGDIRLDR------------AQIRNSIGKYRWP-HTIPYVLED----SLEMNAKGVILNAFERYRLTCIDFKPWAGET----NYISVFKGS--GCWSSVGNRRVGKQELSIGA------NCDRIATVQHEFLHALGFWHEQ--SRS---DRDDYSGREHNFNTYSD---NVPYDYTSVMHYSKTAGQRMDFSDSDLLKLNQLY | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |