Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | KENDTKDRKPKKTNVSRIEYSSENFTKYKKRRYEMVLQAKLPEFKCSIPCLIDTGAQVNVITEETVRAHKLPTRPWLQSVIYGGVYPTKINRKTTKLIINLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSS |
1 | 3s8iA | 0.12 | 0.09 | 0.73 | 1.44 | HHpred | | --------------------------------TMLYINCKVNG--HPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAVAKG--Q-RIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLK |
2 | 5yq8A | 0.16 | 0.12 | 0.74 | 1.13 | DisCoVER | | -------------VTM------------------LYVPCTIN--QVLVKAFVDSGAQNSIMNKRTAERCGMLVDVRMRGVAVGVGRQ-EICGRIHMTPVNLA-GYIPFAFYVIEDQAMDLIIGLDQLDNINVPFLP- |
3 | 5yq8A | 0.18 | 0.14 | 0.77 | 1.46 | SPARKS-K | | ---------------------------AKVTML--YVPCTINQV--LVKAFVDSGAQNSIMNKRTAERCGLMRLVDVRMGVAVGVGRQEICGRIHMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMIDLK |
4 | 5yq8A | 0.17 | 0.13 | 0.77 | 1.20 | MUSTER | | -----------------------------AKVTMLYVPCTINQ--VLVKAFVDSGAQNSIMNKRTAERCGLMLVDVRMRGVAVGVGRQEICGRIHMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMIDLK |
5 | 3s8iA | 0.12 | 0.09 | 0.74 | 2.83 | HHsearch | | -------------------------------VTMLYINCKVNG--HPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAVAKG--QRIIG-RVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLK |
6 | 5yq8A | 0.17 | 0.13 | 0.77 | 1.47 | HHpred | | ------------------------------KVTMLYVPCTINQV--LVKAFVDSGAQNSIMNKRTAERCGLMRLVDVRMGVAVGVGRQEICGRIHMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMIDLK |
7 | 3s8iA | 0.12 | 0.09 | 0.74 | 1.45 | SPARKS-K | | -------------------------------VTMLYINCKVNGH--PLKAFVDSGAQMTIMSQACAERCNIMRLVDRWAGVAKGQ---RIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLK |
8 | 3s8iA | 0.11 | 0.08 | 0.74 | 1.11 | MUSTER | | -------------------------------VTMLYINCKVNG--HPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAK---QRIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLK |
9 | 5yq8A | 0.16 | 0.12 | 0.76 | 2.83 | HHsearch | | -----------------------------AKVTMLYVPCTINQ--VLVKAFVDSGAQNSIMNKRTAERCGLMRLVDVRMGVGVGRQ-EICGR-IHMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMIDLK |
10 | 2i1aB | 0.12 | 0.08 | 0.69 | 1.27 | HHpred | | -----------------------------TQVPMLYINIEINN--YPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDK---KII--------GRIHQAQVKIETQYIPCSFTVLD-TDIDVLIGLDMLKRHLACVDLK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|