>PF12361 (304 residues) AEKVPGDSTHGNVNSGQDSSTTGKAVTGDGQNGNQTPAESDVQRSDIAESVSAKNVDPQK SVSERSDDTASVTGIAEAGKENLGASNSRPSESTVEANSPGDDTVNSASIPVVSGENPLV TPYNGLRHSKDNSDSDGPAESMANPDSNSKGETGKGQDNDMAKATKDSSNSSDGTSSATG DTTDAVDREINKGVPEDRDKTVGSKDGGGEDNSANKDAATVVGEDRIRENSAGGSTNDRS KNDTEKNGASTPDSKQSEDATALSKTESLESTESGDRTTNDTTNSLENKNGGKEKDLQKH DFKS |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | AEKVPGDSTHGNVNSGQDSSTTGKAVTGDGQNGNQTPAESDVQRSDIAESVSAKNVDPQKSVSERSDDTASVTGIAEAGKENLGASNSRPSESTVEANSPGDDTVNSASIPVVSGENPLVTPYNGLRHSKDNSDSDGPAESMANPDSNSKGETGKGQDNDMAKATKDSSNSSDGTSSATGDTTDAVDREINKGVPEDRDKTVGSKDGGGEDNSANKDAATVVGEDRIRENSAGGSTNDRSKNDTEKNGASTPDSKQSEDATALSKTESLESTESGDRTTNDTTNSLENKNGGKEKDLQKHDFKS | |||||||||||||||||||
1 | 2pffB | 0.13 | 0.09 | 0.72 | 1.92 | MRFsearch | ---KQGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-----------------------------------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGQGSQE---------------------------------- | |||||||||||||
2 | 4nl6A | 0.14 | 0.13 | 0.91 | 1.74 | SPARKS-K | --MAMSSGGSGGGVPEQEDSVL--FRRGTGQSDD-----SDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRK--PAKKNKSQKKNTAASLQQWKVGDKCSAIWS-EDGCIYPATIASIDFKRETGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPP----------MPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPDSLDDADALGSMLSGYHTGYYMGFRQNQKEG---RCSHSLN--- | |||||||||||||
3 | 5glkA | 0.05 | 0.05 | 0.93 | 0.78 | DisCoVER | EPLVTIYTADPSAHVFKVYIYPSHDIDAGTPEDMGDHFDMRDYHVLSMNSIPGEVTDHGVALDIKDIPWARQLWAP-DA--ASKYYLYFPAKDFRIGVAVSDSPAGPFKPESEPI-KGSYSIDPAVFK----DDDGKYYMYFGGIWGGQLQRWTTGEYAGSKTDLEQDDAPAIGPRIALMSDDMLSFAEVKEISI-----VDEQGNP------ILGGDHDRRFFEAAWMHKYNGTYYLSYSTGDTHYIVYATGDNPYGPFTYRGVILNPVIGWTNHHSIVWYLFYHDSSLSGGKTHLRCIKVT- | |||||||||||||
4 | 5l4kN | 0.06 | 0.04 | 0.75 | 0.83 | DEthreader | LYEGAIEHLLCGGVIHKGHE---------------------LIHANHGGDIIDYLLN--K---------------------RHGGSLGLGDVYDLKTNLDAVTGEAGLALGMKNQAEDMVLAIALVM---------GRMEEADISLC--KDP----IL--RSGMYTVAAILAVVRAVEHVRYGAAMALGICCAGTGNKEAINLLEPMT----VRGALIASLMQTVNFR-LYGAILAQGIL-DAGGHNVTIS----LQSRTGTSVVLAYTPTCVIARVMPAQLKVLTM--CRYQPFKPLSIGG-- | |||||||||||||
5 | 5glkA | 0.06 | 0.06 | 0.97 | 0.75 | CEthreader | -------VPRGSHMEPLVTHIYTADPSAHVFDGKVYIYPSHDIDAGTPENDMGDHFDMRDYHVLSMNSIPGEVTDHGVALDIKDIPWAGRQLWAPDAASKDGKYYLYFPAKDKED---IFRIGVAVSDSPAGPFKPESEPIKGSYSIDPAVFKDDDGKYYMYFGGIWGGQLQRWTTGEYAGHDASKTDLEQDDAPAIGPRIALMSDDMLSFAEPVKEISIVDEQGNPILGGDHDRRFFVYATGDNPYGPFTYRGVILNPVIGWTNHHSIVEFNGKWYLFYHDSSLSGGKTHLRCIKVTELTHNA | |||||||||||||
6 | 5ctqA | 0.08 | 0.08 | 0.98 | 0.60 | EigenThreader | ALSSVGLHMTKGLALWEAYREFESAIVE---AARLEKVHSLFRRQLAIPLYDMEATFAEYEEWSEDPIPESVIQNYNKALQQLEKYKEAPRERALVENCLVPDLWIRYSQYLDRQLKVKDLVLSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEIWQAYLDYLRRR---VDFKQDSSLKQEVEERFNESGDPSCVIMQNWARIEARLCNNMQKARELWDSIMTRGLERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGSLEDWDIAVQKTETR | |||||||||||||
7 | 5gkeA | 0.18 | 0.05 | 0.28 | 0.29 | HHpred | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRAKSELGSDRVIIVKP------------DGSFLI--------HQSK------KREPV--NWQPPGSRVRLN-PVLKPRETLE--VELEEVYMVSVFRAEDYETGSEAEMAELIFE- | |||||||||||||
8 | 7bwmA2 | 0.24 | 0.03 | 0.11 | 0.20 | MRFsearch | ------------------------RAGGSGSNTTSSP-----------------------------------------------------------------------GIGFKI------------------------------------------------------------------------------------------------PEQNNDSKATLITP-------------------------------------------------------------------------------- | |||||||||||||
9 | 2xd8A3 | 0.10 | 0.07 | 0.76 | 0.39 | FFAS-3D | --------------------------ATDKYALYLKLFSGEMFKG-----------FQHETIARDLVTKRTLKN----GK---SLQFIYTGRMTSSFHTPGTPILGNADKAPPVAEKTIVMDDLLISSASATNFVEPGGTQIRVGSGTNESDAFTASALDAAAAMDEKGPFLGKYGVKYGGTTGETSPGNLGSHIGPTPENANATGGVNNDYGTNAELGAKSCGLIFQKEAAGVVEAIGPQVQVTNGDVSVIYQGDVILGRMAMGADYLNPAAAV----------------------------- | |||||||||||||
10 | 5jcss | 0.09 | 0.09 | 0.97 | 1.54 | SPARKS-K | KSIYMNTKFISLNKGAHTRVVSDILFKNNGINKPDQLIQSSVYDSIFSEAADC--------FAGAIGEFKALEPIIQAIGESLDIASSR-ISLFLTQHVPTLENLDDSIKIGRAVLLKEKLNIQKKSMNSTLFAFTNHSLRLVCIQMTEVGETKMLAKKLTVINVSQQTETGDKPKTVAVPFNATFSLKKNEKFHKMLHRCFNKNQWKNVVKLWNEAYKMAQSILKITNTENENENAKKKKRRLNTHEKKLLLDNFVEGSLVKTIRANLATADTLESISEPDSRSILLSEKGDAEPIKAHDFRI | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |