>PF12322 (203 residues) YKFDVRVGSKIINCRAFTLKEYLELITAKNNGSVEEIVKKLIKDCTNAKDLNRQESELLL IHLWAHSLGEVNHENSWKCTCGTEIPTHINLLHTQIDAPEDLWYTLGDIKIKFRYPKIFD DKNIAHMIVSCIETIHANGESIPVEDLNEKELEDLYSIITESDIVAIKDMLLKPTVYLAV PIKCPECGKTHAHVIRGLKEFFE |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | YKFDVRVGSKIINCRAFTLKEYLELITAKNNGSVEEIVKKLIKDCTNAKDLNRQESELLLIHLWAHSLGEVNHENSWKCTCGTEIPTHINLLHTQIDAPEDLWYTLGDIKIKFRYPKIFDDKNIAHMIVSCIETIHANGESIPVEDLNEKELEDLYSIITESDIVAIKDMLLKPTVYLAVPIKCPECGKTHAHVIRGLKEFFE | |||||||||||||||||||
1 | 1zmaA | 0.09 | 0.03 | 0.39 | 0.64 | DisCoVER | -----FLD---------------------------------------NIKDLEV-TTV----------------VRA-ALDKKETAT-F----FIGRKTCYCRKFAGTLSGVVKAHIYF---------------------------------------------------I-NSEVPGFVHI-T-DG-Q-INVRCDSSSAIK- | |||||||||||||
2 | 2et6A | 0.07 | 0.06 | 0.81 | 0.67 | DEthreader | LG-------IINNAGILR-DA-S-MKKM----TE-KDYKLVIDVHLNGAFN--GLASAKSAIAPLARSRTMLLKVPLYLEN---VAGFYA---IRWERSVFI-VSLKDKVV------------LITGAGGKYAWFAK-YGAKVVTIAWPDIINVILLAYFVFGIGNIKVNIGETTRWQRAGAVFIKEHLNITDENPKSTTE-- | |||||||||||||
3 | 1vt4I | 0.04 | 0.04 | 1.00 | 0.49 | CEthreader | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
4 | 6f3hA | 0.08 | 0.07 | 0.95 | 0.58 | EigenThreader | DIVLLKYAKVILRIPKKLELIHRYLQRIIKNLNIKEATDRKVIDEIDPTTL----LATYWGVREQQQNNLWGSVY-TNTA-LLSPTTVAVLDTAPEDAHEINDGISDGVHIHIADPAGLFVSLKRSFCNRADLSFSNKEDGGIVSNFTYDKVDSILNGDDNQLELLHTLATKLLFNKGLVSLSPDDELCIPTFYDQSQ----T | |||||||||||||
5 | 1vzyA | 0.08 | 0.07 | 0.94 | 0.36 | HHpred | YLVKALAYDGKVRAYAARTTDMVNEGQRRHGTWASAALGRTMTASLMLGAMLKGD-DKLTVKIE--GGGPIG-AIVADANKGGTLSVVKDLGL-REFFIVGPVLVNPGGFIIQLMPGTDDETTPEEILEEVLGEIL-ETMPVRFHPCSKERFETAILGLGKKEIQDMIEE--DG----QAEAVCHFCNEKYLFTKEELEGLRD | |||||||||||||
6 | 4gwpB | 0.10 | 0.08 | 0.81 | 0.55 | MRFsearch | --VRIFTKYILSGESVMDRDS---ESEEAETKDIRKQIQLLKKII---------FEKELMYQIKKECALLISYGVSIEN----ENKVIIELP---------------NEKFEIELLSDKRANLMLVMLRLLLVVIFKKTLRSRISANYKLLLKKIIKDYVNKEIRAFDKLLNIPRRELKINLPLEHKSPNLSLMLES------ | |||||||||||||
7 | 5cwpA1 | 0.15 | 0.08 | 0.55 | 0.54 | FFAS-3D | ----------------MSSDEEEARELIERAKEAAERAQEAAERTGDPR---VRELARELKRLAQEA-----------------------AEEVK------------------RDPSSSDVNEALKLIVEAIEAAV--RALEAAERTGDPEVRELARELVRLAVEAAEEVQRNP----------------------------- | |||||||||||||
8 | 5cwjA | 0.06 | 0.04 | 0.68 | 0.72 | SPARKS-K | ------------DSEEEQERIRRILKEARKSGTLRQAIEDVAQLAKKSDSEVLEEAIRVILRIAKESG------------------------------------------------SEEALRQAIRAVAEIAKEAQDSEVLEEAESGSEEALRQAIRAVDPRVLEEAIRVIRQIAEESGSEEARRQAERAEEEIRRRAQ---- | |||||||||||||
9 | 3d1tA | 0.10 | 0.09 | 0.93 | 0.59 | CNFpred | FPITLKTAEGTQSTVAR--LTMTVYLPAEQKGTHMSRFVALMEQHT--EVLDFAQLHRLTAEMVALLDRAGKISVSFPF-IRSLLDYDVSLTSMKVMIPV-AHNQRSHVTVSLTSDAEVGIEEVIDYVETQASCQLY---GLLKRPDEKYVTEKAYEN-VEDMVRDVATSLIKRIKSFVVESENFEHNHSAYAYIAYP----- | |||||||||||||
10 | 2zkmX | 0.08 | 0.06 | 0.82 | 0.67 | DEthreader | --PKV----KALSVDYYTEMEF-LD-------SGPDLTFH--GWAEDVLAVKHPLTANATFDKILVKLPEPYKLCRPEIDEIF-PEVWFLCGPESLQDKLHHDMTQPLNHYFIN----YRQVLLSGCRCASPYPIFVPLPSDLRGKILIKYIQPISSSRIFWCVPQNMAVFEFNG---------------GYHHLCLHPLTMP | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |