Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | LYVILIAAIVIFWLIAVDRPVLKVSFDDGHLSKVKGHIPPSFKHNLQDIGEHDPFTGELKVYNQRSGMRLVFSKDVPKKVQQRIRNVFPHQGFKANKGKK |
1 | 2l48A | 0.09 | 0.05 | 0.55 | 0.64 | DisCoVER | | KQ-NII-QS--GA------FSPTMALLKMTADFILGLTY--FI--SK-PTSDAQLKAMKYLDR--KGW-WYE---V------------------------ |
2 | 5gj9A | 0.06 | 0.05 | 0.86 | 1.00 | DEthreader | | GLPHDLMDKIEKMTKDHKTCQFYVRHLP-QSNLDISDVSDEYRTAMKDFGKRLEAFGTKVS-NYPPC-G---DAGGII-LL--FQ---DDKV-SGVVTQ- |
3 | 1lqsR2 | 0.09 | 0.07 | 0.80 | 0.59 | CEthreader | | PRPKMAPAQDTYESIFSHFREYEIAIRKVTFTHKKVKHEQFSLLTSGE---VGEFCVQVKPSVASRSNKGMWSKEECISLTRQ----------------- |
4 | 2dlhA | 0.05 | 0.04 | 0.84 | 0.75 | EigenThreader | | GSSGSSGPVLTQTSEQAPSSPYRVYYTMDPWMKHNVADSQ--ITTIGNLVPQKTYSVKVLAFTS--IGDGPLSSDIQVIT------------QTGSGPSS |
5 | 1ygyA2 | 0.12 | 0.09 | 0.75 | 0.27 | HHpred | | -------------------NGRHFDLRQGINLIIHYVDRPGALGKIGTLLGTAGVIQAAQLSEDAPGILLRLDQDVPDDVRTAIAAAVDAYKLE------ |
6 | 5xamA | 0.12 | 0.10 | 0.85 | 0.57 | MRFsearch | | --LLLLTLLGSLLYIWRPFMTLGLDLKGGLRIELAPEELDRVKTVIENRINALVAEPTVTVSG-GKRVVVEIPG-ATPAVQDRARSIIQ----------- |
7 | 3jz3A | 0.10 | 0.10 | 0.99 | 0.47 | FFAS-3D | | LEDLLQSSVDIYHTAQQAKIDVRLTLNAHKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNADNFIVRDNGPLGLSIVQRIAKLHGNVEFGNAEQG- |
8 | 6wxoA2 | 0.09 | 0.06 | 0.70 | 0.71 | SPARKS-K | | ---------------------MTITFRGDDL--------EALLKAAIEMIKQLKFGATITLSLDGNDLNINITG-VPEQVRKELAKEAERLAKEFGITVT |
9 | 1jvaA | 0.12 | 0.10 | 0.86 | 0.62 | CNFpred | | --NIGTRETFLAGLIDSD---GYVTDEGIKATIKTI--HTSVRDGLVSLARSLGLVVSVNAEP-KISYAIYMSG------GDVLLNVLSKCAGSKKFRPA |
10 | 1jskC | 0.06 | 0.05 | 0.82 | 1.00 | DEthreader | | ------------D-A-HSLR-CNLTIKDPLWYEAKCLTPKNLCQKLRNKVSNTYPHLQVTMIYPSPSATWEFNDSYSGVIMNWKDGFQLKFLIHE-SQ-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|