>PF12307 (188 residues) RMRRRARNEKVEPFRARVHEAEGHKLRDRLATWAEQVREAVMGAWPTMPDGVTDRPADVW EPLIAVADAAGGEWPERARAACVELVTASKANDKGSLGVRLLTDLRDHVMVGIDRLPTVA ILDRLNALDDAPWADLHGKPLDNRRLSKMLAEYMTVDNEPITSRNIKTGGSVLKGYYAAD LTDAWARY |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | RMRRRARNEKVEPFRARVHEAEGHKLRDRLATWAEQVREAVMGAWPTMPDGVTDRPADVWEPLIAVADAAGGEWPERARAACVELVTASKANDKGSLGVRLLTDLRDHVMVGIDRLPTVAILDRLNALDDAPWADLHGKPLDNRRLSKMLAEYMTVDNEPITSRNIKTGGSVLKGYYAADLTDAWARY | |||||||||||||||||||
1 | 4nscA1 | 0.08 | 0.05 | 0.56 | 1.03 | DisCoVER | ERFGLLAYS----------GVQSKKLTAM-----------------------QRQLK------------------------KHFKEGKGL-TFQEVNFFTFLKNIN-DVDTALSSLDKVTMQQVARTV--AKV------------E--LSDHVCDVVFALF-DC-----DGNGELSNKEFVSIMKQR- | |||||||||||||
2 | 5udb9 | 0.05 | 0.04 | 0.76 | 0.83 | DEthreader | --------------------------PP--G-TGKTAQLMPMEIVIIKFAAKK--CAGN-TGDLRKLF-DVLRGSIEIGLNYIAKVFSNSTRTRIAKQKLILCTII-QSLKLNSDATIDESFDHYIKAKTDT-LAP-LQREFLEIC-TILETCGL----VSIKKTKCKGKKRFVDKI---DV-DLDME | |||||||||||||
3 | 3cuqA | 0.12 | 0.10 | 0.80 | 0.57 | CEthreader | ----------------AQMSKQLDMFKTNLEEFASKHKQEIRKN------------PEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYE--LGVQIIEVCLALKHRNGGLITLEELHQQVLK--GRGKFAQDVSQDDLIRAIKKLKALGT------GFGIIPVGGTYLIQSVPAELNMDHTVV | |||||||||||||
4 | 4tncA | 0.09 | 0.06 | 0.74 | 0.67 | EigenThreader | -------------AMDQQAEARAFLSEEMIAEFKAAFDMFTKELGTVMRGQNPTKEE---LDAIIEEVDEDGSGFLVMMVRQMKEDAKGKSEE--------ELADCFRIFDADGFIDIEELGEILRATGEHV------TEEDIEDLMKDSD---------KNND---------GRIDFDEFLKMMEGV | |||||||||||||
5 | 2pffB | 0.15 | 0.14 | 0.96 | 0.31 | HHpred | --FRAVGAQLVAIFGGQNTDDYFEELRGDLIKFSAETLSEIRTTGLNILEWLENPSNTPDKPLIGVIQLAHYVVTAKLRSGLVTAVAIAETDSWESFFVSVRKAITV-LFFIATSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNSHLPAGKQLVNGKNLVVSGPPQSLYGLNTLRK----- | |||||||||||||
6 | 1aj4A | 0.08 | 0.06 | 0.77 | 0.40 | MRFsearch | ---------IYKAAVEQLTEEQKNEFKAAFDIFVLELGKVMRMLGQ-------NPTPEELQEMIDEVDEDG--SGTVDFDEFLVMMVRSMKDDSKGKTEEELSDLFRMFDKNDGYIDLEELKIMLQATG---------ETITEDDIEELMKDGDKNN---------------DGRIDYDEFLEFMKG- | |||||||||||||
7 | 2ccmA | 0.09 | 0.07 | 0.83 | 0.62 | FFAS-3D | ------AAHQLSDFQRNKILRVFNTFWDDFELAIKKICNLHSPTDGKKHNEARATLKLIWDGLRKYADENEDEQKEEWLKMWAECVKSVEKGESLPEWLTMNFMFDVNDTSGDNIIDKHEYSTVYMSY-----------GIPKSDCDAAFDTLSDGGKTMVT---------------REIFARLWTEY | |||||||||||||
8 | 5cwfA | 0.15 | 0.12 | 0.80 | 0.87 | SPARKS-K | SDEMKKVMEALKKAVELAKKNNDDEVAREIERAAKEIVEALRENN-------SDEMAKVMLALAKAVLLAADEVAREIARAAAEIVEALRENNSDEVMLALAKAVLLAAKNNDDEVAAAEIVEALREN-------------NSDEMAKKMLELAKRKNND-----------------DETAREIARQA | |||||||||||||
9 | 1kq3A | 0.13 | 0.11 | 0.83 | 0.54 | CNFpred | -----------------TAYALARLCYETLLEYGVLAKRSVEEK------SVTPALEKIVEANTLLSGLGFESGGLAAAHAIHNGLTVLENTHKYLHGEKVAIGVLASLFLTKPRKMIEEVYSFCEEVLPTTLAEIGLDGVSDEDLMKVAEKACDK-NETIHNEPQP--------VTSKDVFFALKAA | |||||||||||||
10 | 6ns2A | 0.07 | 0.05 | 0.77 | 0.83 | DEthreader | -----FDADIMRNIRQFSPLHEDGRLHLSP-DD--TC-DIAEKE-----------------------D---WPWRYAKTVAQTADWARHEVATHLVDTHMIEEAIIVATNR-PEGELLYELYIGWCEITNGQIPTFP-TITQLIDAVTMIHTSPTAYLNLIYALTITNTKFNCI------TAISILI- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |