>PF12297 (424 residues) GDAFAVSYTATLQAGDIWNGESLKLPAQLTFQSSSQNRTQLKALFTITAEENIRVLPNHG LHAAGFFFAFLLSLVLTWAALFLMVRYQCLQGNVLTRRRVWQHESKLEPLPFTSADGVSE DLSLNDQMIDILSSEDPGSMLQALEELEIATLNRADADLEACRTQISKDIIALLLKNLTS SGHLSPQVERKMSAIFKKQFLLLENEIQEEYDRKMVALTAECDLESRKTMENQYQREMMA MEEAEELLKRASERSAVECSNLLRTLHGLEQEHLRKSLALQQEEDFAKAHRQLAVFQRNE LHSIFFTQIKSALFKGELKPEAAKMLLQNYSKIQENVEELMDFFQANKRYHLSKRFGHRE YLVQNLQSSETRVQGLLSTAAAQVTHLIQKHERAGYLDEDQMEMLLERAQTEVFSIKQKL DNDL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | GDAFAVSYTATLQAGDIWNGESLKLPAQLTFQSSSQNRTQLKALFTITAEENIRVLPNHGLHAAGFFFAFLLSLVLTWAALFLMVRYQCLQGNVLTRRRVWQHESKLEPLPFTSADGVSEDLSLNDQMIDILSSEDPGSMLQALEELEIATLNRADADLEACRTQISKDIIALLLKNLTSSGHLSPQVERKMSAIFKKQFLLLENEIQEEYDRKMVALTAECDLESRKTMENQYQREMMAMEEAEELLKRASERSAVECSNLLRTLHGLEQEHLRKSLALQQEEDFAKAHRQLAVFQRNELHSIFFTQIKSALFKGELKPEAAKMLLQNYSKIQENVEELMDFFQANKRYHLSKRFGHREYLVQNLQSSETRVQGLLSTAAAQVTHLIQKHERAGYLDEDQMEMLLERAQTEVFSIKQKLDNDL | |||||||||||||||||||
1 | 2yfaA | 0.08 | 0.04 | 0.52 | 0.74 | DisCoVER | ---------------------------------------------------------------G-SHMGDIG-QLNKDLT-DLRIARLQYMIANG----------DDTAANTLKLDAF-SKQQA--YLATTF----KSPENVKLL-GELGDTISAYKLS--LK--MR-QGY--DA----------------TRAARV-SMDSS---AI-RADQAMDALSQEVMLAQYQLISKARQQLLQVR-IDVRGYIAE---NSSANEQAALRQLDAALADTDNLKRQLEDARL-QQ---FENAVL-AYRDAVR-QF--R------------DAV-AN--IT-TS---RA-EMTVQGADIV-KR--SDALYQIQL--------------------------------------------------------- | |||||||||||||
2 | 3k07A | 0.08 | 0.05 | 0.62 | 0.67 | DEthreader | SITWIINPVDIYEYARLQWFLELTIPD-------------EVAADKLLKLPGVEIVT--TY--DRSQLIDRAIDNLSGKLLEEFIV-VA---VVCALFLWHV-----------II--------------------------------I---GGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPTRQVITDASVEVGPALFISLLIITLSFIP-IFTLEGQEGRLFG-PLAFTK-TYAMAGAALL-AI--VV-IPILMG-----------------LPQISVATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSL---AYHGAVLRVRPKAMTVAVIIAGL-LPILWG-TGAGSEVMS----------------------------------------------------------------- | |||||||||||||
3 | 6djsA | 0.05 | 0.04 | 0.98 | 0.59 | CEthreader | EEERFLDAAEYGNIPVVRKMLEESKTLNVNCVDYMGQNALQLAVGNEHLEVTELLLKKENLARIGDALLLAISKGYVRIVEAILNHPGFAIHSRSRINAYKGLASPAYLSLSSEDPVLTALELSNELAKLANIEKEFKNDYRKLSMQCKDFVVGVLDLCRDSEEVEAILNGDLESAEPLEVHRHKASLSRVKLGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTRYQQIMKRLIKRYVLKAQVDKENDEVNEGELKEIKQDISSLRYELL------- | |||||||||||||
4 | 5w3sA | 0.08 | 0.05 | 0.64 | 0.75 | EigenThreader | LLTVELQFKLKAINLQTVLPDCYDFTLTITFDNKAHSGRSLDNDISIRECKDWHVSGHNMMIFDAFVILTCLVSLILCIRSVISGLQLQQEFVNFFLLHYKK-------------------------------DVSVSDQMEFVNGWYIMIIISDILTI----------IGSILKMEIQAKSLTSY----------------------------------------------------------------DVCSILLGTSTMLVWLGVIRYKYNLLILTLQAALPNVIRFCCCAAMIYLGYCFCGWIVLGFSLINGDDMFATFAKVWLFSRIYLYSFISLFIYMILSLFIALITDTYETIKHYQQDGF-------------------------PETELRTFIS--------------------- | |||||||||||||
5 | 4wvmA | 0.14 | 0.09 | 0.64 | 0.34 | HHpred | ------------------LGRPFTLGMLYDARREKLSNAQRSSEFKIVASDST----ESKSSAMDIEASLGVSFLGGLVE---------VGGSYLNNTKKYQNQSRLK---YK-ATTVYKQFLYGANAFFVSDSDKV----------DIQ------------------GKMEAAIKKIPTISILTD-----------------------E-----------------------------EKSLASNLSKDSLPTTFEDAVKTYQTLPT-------------------NSV-PMKVWLAP---------------N-VSKVRRIHTTLEELHKLKRRANEAMDVKLVQRIPLIHDKISNFQQIFQYMLTVQKKIAEKLPLVEQSLQKIIDDR-AQSPFSNEKVSKWLDAVEREIAVLKSCAGM-- | |||||||||||||
6 | 4tqlA | 0.12 | 0.06 | 0.53 | 0.62 | MRFsearch | ---------------------------------------------------------KQMVQELEKARDRMEKLYKEMVELI-------------------------------------------------------QKAIELMRKIFQEVKQEVEKAIEEMKYDEAKKKIEQMIQQIKQG--GDKQKMEELLKRAKEEMKKVKDKMEK----------------LLEKLKQIMQEAKQKMEKLLKQLKEEMKKMKEKMEKLLKEMKQRMEEVKKK---------------------------------------------MDDELLEKIKKNIDDLKKIAEDLIKKAEENIKEAKKIAEQLVKRAKQLIEKAKQVAEELIKKILQLIEKAKE-------IAEKVLKG---------------- | |||||||||||||
7 | 2tmaA | 0.15 | 0.10 | 0.64 | 1.40 | FFAS-3D | --------------------------------------------------------------------------------------------------------------------------------IKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDE----LDKYSEALKDAQEKLELAEKKA-TDAEADVASLNRRIQ-LVEEELDRAQERLATALQKLEEAEKAA-DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVII-ESDLERAEERAELSEGKCAELEEEIKTVTNNLKSL-----EAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI--------DDLEDELYAQKLKYKAISEELDH-- | |||||||||||||
8 | 7jh5A | 0.14 | 0.09 | 0.64 | 1.00 | SPARKS-K | ----------------------------------------------------------------------------------------------------------------------------------------SGSELARKLLEASTKLQRLNIRLAEALLEAIARLQELNLELVYLAVELDPKRIRDEIKEVKDKSKEIIRRAEKEIDDAAKESEKILEEAREAISE-----LAKLLLKAIAETQDLNLRAAKAFLEAAAKLQELNIRAVELLVALEHAKRRSKEIIDEAERAIRAAKRESERIIEEARRLIEKGSE----LARELLRAHAQLQRLNLELLRELLRALAQLQELNLDLLRLASELTDP---------DEARKAIARVKRESNAYYADAERLIREAAAASEKISREAERLI | |||||||||||||
9 | 3edvA | 0.13 | 0.09 | 0.70 | 0.86 | CNFpred | --------------------------------------------------------------------HRLFQLNREVDDLEQWIAERE----------------------------------------VVAGSHELGQDYEHVTML-QERFREFARDTGNIGQERVDTVN-HLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLPEE-------LGRDQNTVETLQRMHTTFEHD---IQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVL-------EAWKSLLDACESRRVRLVDTGDKFRFFSMRDLMLWMEDVI-SVELLMNNHQGIKAEIDARNDSFTTCIKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDRW | |||||||||||||
10 | 3v0aB | 0.06 | 0.03 | 0.55 | 0.67 | DEthreader | --------------------------------------------------------------------------------------------------------NIEYSQLNIVDLLVSGLNLNYFSFSIMNGFVNGQINA-----------------------R---------IP--LPLNDLNEKLFNIYSKNTAYFKKIYYNFLDQWWTQYYSQYFDLICMAKRSVLAQETLIKRIIQKKLSYLINSNISSNLALMNLTTTNTLRDISNESQIAMNNVDSFLNNAAICVFESNIYPKFISFMEQCINNINIKKEIQKLQLINQNVFNSLDFE-FL--NIQNMKSLFSSEALLIKEETWPYESGKNTSFSNDF------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |