>PF12293 (236 residues) PLSPEQIVRLKQMYQTTEYAQASTPGTPPKPTATSQFVNLSPGSTPPVIRLSQGFVSSLV FLDSTGAPWPISAYDLGDPSAFNIQWDKTSNTLMIQAMKLYNYGNLAVRLRGLNTPVMLT LIPGQKAVDYRVDLRVQGYGPNAKTMPMEEGIPPSASDILLHVLDGVPPAGSTRLVVSGG DARAWLSNNKMYVRTNLTILSPGWLASMTSADGTHAYEMQKSPVLLVSWHGKVMQL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | PLSPEQIVRLKQMYQTTEYAQASTPGTPPKPTATSQFVNLSPGSTPPVIRLSQGFVSSLVFLDSTGAPWPISAYDLGDPSAFNIQWDKTSNTLMIQAMKLYNYGNLAVRLRGLNTPVMLTLIPGQKAVDYRVDLRVQGYGPNAKTMPMEEGIPPSASDILLHVLDGVPPAGSTRLVVSGGDARAWLSNNKMYVRTNLTILSPGWLASMTSADGTHAYEMQKSPVLLVSWHGKVMQL | |||||||||||||||||||
1 | 1jofA | 0.08 | 0.06 | 0.76 | 1.05 | CNFpred | ------------------------------TCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-----KKWSSFAVKSPTEIVHEASH-TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSEGKLEKNVQNYEYQ---ENTGIH-------------GMVFD-----PTETYLYSADNKLWTHRKLGEVELVGSVDAPDPHPRWVAMHPTGNYLYALMEGNRICEYVIHMPVYT | |||||||||||||
2 | 6vs7A | 0.09 | 0.07 | 0.80 | 0.77 | DisCoVER | ------------------------DTTPPTITLQEVIAYRG-----------EEFEFFVETTDDS-GRVNRVIVRNIDPNWIRYSTDNATLRTRVYGIVPIDRYTKYVRAEDA---------AGNITASERFVLVIRPQTYVDDRVAPVFVDEGRDYIFAELHFYDNSG-KITNVNFLGFTFNTNATE-PLVTTIRKSLPAGKYTFKVRATDAEAKIFRIVFANQTDDTPASRSR- | |||||||||||||
3 | 6fb3A | 0.08 | 0.06 | 0.73 | 0.83 | DEthreader | -------NGGSLPWN--SF------------------FVRP----DPVIISSKSLLKIIMTQSLVPLNLIKVHLMVAV-HLFQKSFLASPNLAYTFIWDKVSDAVVSVGFEYLILWEKRTALLQSFTQ---------------VRPLS-------------C-DSSMQVRLEWPTDLAVDLYVLENNVESASAIAISVLYISNRLRQVTTN--GEICLGNSPSSLAVAPDGTIYIA | |||||||||||||
4 | 5ftxA5 | 0.09 | 0.03 | 0.38 | 0.54 | CEthreader | -----------------------------------VLETIAVDSTGVSVAKGQKATFKVTLKDQYGNKFTGNNVTSDKTETATVSVSNQSEYTVTVNGVAEGSTTITIKSGTKEVKVPVNVVAG---------------------------------------------------------------------------------------------------------------- | |||||||||||||
5 | 6vs7A | 0.11 | 0.08 | 0.79 | 0.63 | EigenThreader | -------------------------TDTTPPTITL----------PQEVIAYRGEEFEVETTDD---SGRVNRVYLDPNWIRYSTDSVPGNARVYGIVPINHGVGVRAEDAAGNITAFVLVIRPQVPTLTYVQ-----------NANSLTQTDKDAVIAAVKSANPNLPATSTYSVSEDAPVFVIFYRGEELHFYDITVNFAGDTFNTATEQNPLVTTITIPKSVRATDASGLIFR | |||||||||||||
6 | 2ypwA | 0.12 | 0.06 | 0.45 | 0.54 | HHpred | --------------------LEVGRNSPYD--YRIKSVVYNPVN-VVKIDAVAGVATHIVVAPDE----TYITHAFGDSESRTFAH--KMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETGTVSKSFIE----------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 2pn5A1 | 0.09 | 0.06 | 0.68 | 0.68 | MRFsearch | -----------------------------RTVVKQSQITVYR--YAYRVELIKPFKCALQFTHHDGTPAK--------GISGKVEVSDVRFETTTTSDN---DGLIKLELQPSTEQLSIHFNAVGFFFYEDVNKVETV--------------------------------TDAYIKLELKLMRFMVTCFVYYVMSKGNIIDAGFMRPNK--QPKYLLQLNAKILIATVAGRTVVYD | |||||||||||||
8 | 3u1wA | 0.12 | 0.10 | 0.84 | 0.51 | FFAS-3D | GIILPPVENAFQEK---------------YPDAKNPVFEIEGN--YYVVDFNNGGSETTAWFTDQGI-WEKIDISFAQSTAFKQSFYSNWTVDDTYAINRLNGIVYKIEAEQSNSEVDLYYSQYGNLIKAVDD-------------EINNDAPIVIPKEVSNLEITFANAELLDIQQNSLGYELDIDNQVAQLNKDYRWQSPQIVQYTLLNANGTFYL------FKVSHNGQDKTI | |||||||||||||
9 | 2ivzD2 | 0.13 | 0.11 | 0.89 | 0.64 | SPARKS-K | -TRIAYVVQTFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLNGAV---RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQQNLAFTSDQAGRPQVYKVNI---------NGGAPQRITWEGSQ--------------NQDADVSDGKFMVMVSSQHIAKQDLAVLSSTFDETPSLAPNGTMVIYSSSSVLNLVSTDGFKARL | |||||||||||||
10 | 1l0qA | 0.14 | 0.10 | 0.70 | 1.05 | CNFpred | -----NISVID-----------------VTSNKVTATIPVGS--NPMGAVISPDGTKVYVANAH---SNDVSIIDTA-SSPQGVAVSPDGKQVYVTNMA---SSTLSVIDTT-SNTVAGTVKTG----KSPLGLALSP--------------------------------DGKKLYVTNKTVSVINTVKAVINTVSVGR---SPKGIAVTPDGTKVYVANFSMSISVIDTNSVIDT | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |