>PF12291 (254 residues) MIQYGLPILYVIFLWWFSTGAIIYLDGLPQRTYRWSMLGASVLAGIALYALALTAHQETL FGAYVAFTGAIILWGWVEMSFLMGMITGSRRSRCPEGALGWRRFIYAVQAILYHEFALII AALAIVLVTWGGANMVGLYTFLILWVMRTSTKLNVFLGVRNLNEEWLPDHLRYLESYFRK KPMNLLFPISVTASTIVAVLIVQTAMDPSATTHQVAGATFLAILMILAILEHWFLVLPLP SQALWNWALRSRQP |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | MIQYGLPILYVIFLWWFSTGAIIYLDGLPQRTYRWSMLGASVLAGIALYALALTAHQETLFGAYVAFTGAIILWGWVEMSFLMGMITGSRRSRCPEGALGWRRFIYAVQAILYHEFALIIAALAIVLVTWGGANMVGLYTFLILWVMRTSTKLNVFLGVRNLNEEWLPDHLRYLESYFRKKPMNLLFPISVTASTIVAVLIVQTAMDPSATTHQVAGATFLAILMILAILEHWFLVLPLPSQALWNWALRSRQP | |||||||||||||||||||
1 | 3rkoB | 0.11 | 0.09 | 0.83 | 1.24 | CNFpred | --MLMWATLMLLGGAVGKSAQQTWLADAMGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQT-------------DIKRVLAYSTMSQIGYMFLALGVQAWDAA-----IFHLMTHAFFKALLFLASGSVILACQNIFMGGLRKSIPLVYLCF------LVGGAALSAAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFH---------------- | |||||||||||||
2 | 3vvnA2 | 0.10 | 0.07 | 0.68 | 0.62 | DisCoVER | MFFLNSVA------------------------------------------------ITAGGNGVAVFTSAWRITMLGIVPILG---MAATTSVTGAAYNVEKLETAYLYAIKIAFMIEVFIMLFAPQVAYLFTIKDLISALRTLPVFLVLTPFGMM---TSAM--F------Q--GIGEGEKSL--LTIFR--TLV-M--QVGFAYIFVTTLG--LRGVWIGIVIG-NMVAAI-VGFLWGRMRISALK------ | |||||||||||||
3 | 1n1zA | 0.03 | 0.03 | 0.80 | 0.83 | DEthreader | -PHQHGYQRKMAATIIVLATVIDDIDVYGTDELELFTDTFKRWDTHN-IS--AY-ILKEHGF--FC-LQYLRKSVVDLVEAYFHEAKW--SGYT-------PSLDEYLNIAKIS---P---S--------SHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKIQCYMEVEVKFLIREAWKDMNTAIAAGY-P------------FPDGMVAGAANIGRVAQFIYLHDGFGVQHS-------- | |||||||||||||
4 | 3mktA | 0.08 | 0.07 | 1.00 | 0.49 | CEthreader | DVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFKPAMVIGFIGLLLNIPLNWIFVYELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFPKELIRLFRLGFPVAAALFFEVTLFAVVALLVASTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVG-LMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR | |||||||||||||
5 | 6larB | 0.08 | 0.07 | 0.83 | 0.95 | EigenThreader | WGPTHIARGAALALIGLILVGTGLSVAHRVITQFIVSGIALATVIAALAV-----RNRSA------VLATSLAVTALVPVAAAFALGVPGDFGAP----------NVLLAAAGVAAWSLISMAGS------PDDRG-IAVFTATAVTGVGVLLVAGAASLWVI---------------SSDVIGCALVLLGLIVTVQAAQLSAMWAVLADRVRVSQAHQTGVIAAGVLLGVAGSVALVSSAALLVAFVIGDRYQ | |||||||||||||
6 | 2r6gF | 0.15 | 0.11 | 0.71 | 0.27 | HHpred | -WTVVFSLITVFLTVAVGMVLACLVQWEALRVYRVLLPYAVPSFISILIFKGLFNQSFGEINMTTARTMLIIVNTWLGYPYMMILCMGLLKAIAMDGAGPFQNFFKITLPLLIKPLTPLMIASFA--FNFN--------NFVLIQLLT--------NGGPDGYTDLLVNYTYRI--AFEGQDFGLAAAIATLIFLLVGALAI---------------------------------------------------- | |||||||||||||
7 | 3l1lA | 0.09 | 0.08 | 0.87 | 0.32 | MRFsearch | --DPWVLTITCVVVLWIFVLLNIVGKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAIQSTLNVTLSFIGVESASVAAGVVK-----------NPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNGDTAGAIVSFCAAAGCLGSLGGWTLLAAAADDGLFPPIFARVNK--------AGTPVAGLIIVGILMTIFQLSSIS---PNATKEFGLVSSVSVIFTLVPYLYTC----AALLLLGH----- | |||||||||||||
8 | 6s3kB | 0.12 | 0.10 | 0.85 | 0.78 | FFAS-3D | ---YILTVAVSISAGPIAIFLVLVISESASILAYPVYLFVVALLVLIAVGLFKLMTGQTLFLLLKAFSSGCSALGVEAISNAIPAFKNPPAR------NAARTLAMMGILLAILFSGITVLASQIASETFGRNVFYYVIQGVTSLILVLAANTGFS-AFPQLRDQYMPRMFTVR-------GDRLGFSNGIIFLGFASIVLIILFGGQTEHPLYAVGVFIPFTLSQTGMCMKW--------------------- | |||||||||||||
9 | 5y78A | 0.09 | 0.08 | 0.94 | 0.95 | SPARKS-K | TLVHTLKVGFYFFLWYFFNFIFNIANKRTLNMWKYPWVLSTIQLGVGALYCTFLWVLKLIKALIWPSLGHTLGHAATCMSFSLVAI-------------SFTHVVKSAEPVFGAVGSALVLGVALSAATELTFTITAMISNVAFVTRNITSKFTMVDF--KNEKTLIAQNTYALITIIFPPLVSGSIMFCSLFYHLYNEVSYLCLDNVSPVSFSIGNTIKRVIIIFGSILVFRTPVTRLNFIGSTIAIIGTMLY | |||||||||||||
10 | 3rkoC | 0.14 | 0.13 | 0.93 | 1.21 | CNFpred | LAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLMWILGGVIGVFLAI-----DMFLFFFFWEMMLVPMYFLIALWGHK--------ASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYWTFNYEELL-VEYLLMLGFFIAFAVKMPVV--LHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLG-KRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |