Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | ILTRPKEPEFVTAQRVRPTRVKSSAELEEEMMAKIPKFKARPLNKKILEVPTLPALPKSTPQLPEFKEFHLQTMARANQNAETSTVASIDSTQSHQWKSLHLTAPTSPVLKTSLRGRPPRIRSSKEMEKEELEKVPKFKARPLNKKIFESKGDLGMFCNTKRQVTVPQEFHF |
1 | 3zxaC1 | 0.09 | 0.06 | 0.74 | 0.71 | DisCoVER | | ALAYRSGSELIT-T-LKKNTDTEPK--Y--TTAVLNPSEPGTFN-QL-----IKEAA--QYEKYRFT--SLR---------------FR-Y-------SPMSPSKVALAFDRDPPNDLLNIEGC-VSS-VPW-TGFSTDRFVMA-TYGQGAAQLGEVRVEYTVQLKNRTG-- |
2 | 1cqeB2 | 0.05 | 0.03 | 0.77 | 0.83 | DEthreader | | ----------------WDNATIRDTLMRLVLTVRS-------MFAFFAQHFTHQFKT-PG------GHGVDLGHIYGDNLERQYQLRLLKYQYPMGMLYATLEHNRCDLLKA------PTWGDEQLFQTARLILIGETIVIKFDPELLFG-AQFQYR--FMPFLGGNPCSWT |
3 | 1gx3A | 0.10 | 0.10 | 1.00 | 0.54 | CEthreader | | IPVADLSAEALFAKLVDRRRGGYCYEHNGLLGYVLEELGFEVERLLSVAVPGADGRYTLTSPIRLEAGPVQQTRHEPYRLTRHGDDHTLAAQVRGEWQPLYTFTTEPRPRIDLEVGSWYVSTHPGSHFVTGLTVAVVTDDARYNLRGRNLAVHRSGATEHIRFDSAAQVLDA |
4 | 5mqfK | 0.07 | 0.06 | 0.90 | 0.60 | EigenThreader | | APGVREAAAALVEEETRRYRPTKNYLSYLTAAWQECVNNSMAQLEHQAVRIENLELMSQHG-------CNAWKVYNENLVHMIEHAQKE----LQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENIRQDF------ |
5 | 2pffB | 0.13 | 0.13 | 0.95 | 0.23 | HHpred | | -----SQGLVTAVAIAETDSWESFFVITVLFFIGVRCYEAYPLPPSILEDEGVPSPMLSISNLPAGKQVEISLVNGAKNLVVSGPPQSLKAPSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC---- |
6 | 2pffB | 0.07 | 0.02 | 0.25 | 0.47 | MRFsearch | | -------PDDDYGFKQGGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDI-------------------------------------------------------------------------------------------------------------------------- |
7 | 2ftcA | 0.08 | 0.07 | 0.88 | 0.42 | FFAS-3D | | -LSLPENASEVKIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVPEIMP-ELNRLRKKLNKKYPKLSRNSIGRDIPKM------------LELFKNGHEIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCRHRPLNLGPFV------VRAFLRSSTSEGLLLKID- |
8 | 3rj1C | 0.08 | 0.07 | 0.83 | 1.24 | SPARKS-K | | RRLAQLTHSLRRIRDESKAELPQWYTLQSQLNVTLSQLVTSTLQHFQETLDSTVVYPLPKFPTTS-HESLVTTLLRKKNIPEVDEWKYVRETSGVTTALL---------------KDEEIEKLLQQDREITNWARTT-----FRNEYGKHDPDVLKFTFTGEK--------- |
9 | 1dceA | 0.22 | 0.05 | 0.22 | 0.21 | CNFpred | | -----------------------------------------------------------------------------------------------------------------MHGRLKVKTSEEQAEAKRLEREQKLLYQSATQAVFQK---------------------- |
10 | 5yfpD | 0.07 | 0.05 | 0.70 | 0.83 | DEthreader | | ---------------------LALAFLDDTS--L--F---KVHSQVFNTNVAYGKSMQENLCANKITKSELDNNLKYTIDVVNELQEPNQQLELQEHLLFNLIERAIDEILLRDYKSFLPKIQMTMDYLFTVE-VENPHN-DLQ---SE-RRSK------------------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|